Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g1442 | ATGGAGTTTTGGGGTGTTGAGGTTAAAGCTGGAGAGCCTCTTTCGGTGAGTCCCGGAGAGGAGAAGATATTGCATCTGTCGCAGGCATGCCTTGGAGAGTCCAAGAGCAAAGGAGGTGAACAGGTTTTTATGTATGTCAAGGTTGGCAATCAAAAGCTTGTTCTAGGTACTCTATCCTCAGAGAAATTCCCACAAGTGTCTTTTGATCTGGTGTTTGACGAAGACTTTGAGCTATCTCATAATTGGAAAAATGGAAGTGTCTACTTTACGGGATATACATCTCTCATCCAAGAAGAGGAGGAATCTTATACTGATTCTGAAGAGGATTTATCACTAGCTGCTATAGACAATGGAAAGCCGGAGCCACAGCCAAAGAAAGATGCAAAGCCCGAAACTTCTGGAACCAAGAAAAAAGTGCAGATTGTAGAACCAAACAAAGCTGCCTCAAATTCTGTTCTTGACCATAAGAAGAATGAAGATAGTTCTGATGAAGATGATGATGAGGATGAAGACAGCTCTGATGATGAGAATGCAGAGGGAGGTGAAAAAGACAACAGCGATGATGAAAATAAAATTTCCGAGGATGACAGTGATGATGAAGAAGATGAGGACTCGGATGACAGTTCAGAAGAGGACGAGCAGACACCCATAAAGGCTGAAGCAAGCAAGAAGAGACCTCTAGAGTCCGCTAATAAAACGCCTGCACCTGATAAGAAGGCAAAATTCGTCACTCCGCAAAAAACTGATGGCAAGAAAGGTGTTCCTCACGTAGATACTCCTCATCCTTCAAAGAAGGCTGGGAAAACTCCTGCTGCTAGTGACCAAAATAAACAGCAAACTCCGAAATCAGCTGCTGGTGCATTCCCCTGCAAATCTTGCAACAGGGCATTTGGCTCTGAAACGGCCTTACAATCCCACTCAAAAGCTAAGCACAGTACTGAGAAGTGA | 948 | 43.88 | MEFWGVEVKAGEPLSVSPGEEKILHLSQACLGESKSKGGEQVFMYVKVGNQKLVLGTLSSEKFPQVSFDLVFDEDFELSHNWKNGSVYFTGYTSLIQEEEESYTDSEEDLSLAAIDNGKPEPQPKKDAKPETSGTKKKVQIVEPNKAASNSVLDHKKNEDSSDEDDDEDEDSSDDENAEGGEKDNSDDENKISEDDSDDEEDEDSDDSSEEDEQTPIKAEASKKRPLESANKTPAPDKKAKFVTPQKTDGKKGVPHVDTPHPSKKAGKTPAASDQNKQQTPKSAAGAFPCKSCNRAFGSETALQSHSKAKHSTEK | 315 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 28946260 | 28951955 | - | Sed0003899.1 | Sed04g1442 | 710045 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g1442 | 315 | Pfam | Nucleoplasmin-like domain | 3 | 93 | IPR041232 | - | |
Sed04g1442 | 315 | MobiDBLite | consensus disorder prediction | 161 | 183 | - | - | |
Sed04g1442 | 315 | Gene3D | Nucleoplasmin core domain | 1 | 100 | - | - | |
Sed04g1442 | 315 | MobiDBLite | consensus disorder prediction | 120 | 136 | - | - | |
Sed04g1442 | 315 | MobiDBLite | consensus disorder prediction | 269 | 285 | - | - | |
Sed04g1442 | 315 | MobiDBLite | consensus disorder prediction | 212 | 235 | - | - | |
Sed04g1442 | 315 | MobiDBLite | consensus disorder prediction | 191 | 211 | - | - | |
Sed04g1442 | 315 | MobiDBLite | consensus disorder prediction | 114 | 293 | - | - | |
Sed04g1442 | 315 | MobiDBLite | consensus disorder prediction | 242 | 263 | - | - | |
Sed04g1442 | 315 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 290 | 311 | IPR013087 | - | |
Sed04g1442 | 315 | Pfam | C2H2-type zinc finger | 287 | 312 | IPR013087 | - | |
Sed04g1442 | 315 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 288 | 315 | IPR013087 | - | |
Sed04g1442 | 315 | FunFam | Histone deacetylase HDT1 | 1 | 98 | - | - | |
Sed04g1442 | 315 | Gene3D | Classic Zinc Finger | 286 | 314 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3157 | Sed-Chr1:56373465 | Sed04g1442 | Sed-Chr4:28946260 | 8.80E-38 | dispersed | |
Sed04g1442 | Sed-Chr4:28946260 | Sed05g1239 | Sed-Chr5:20851788 | 1.70E-21 | dispersed | |
Sed04g1442 | Sed-Chr4:28946260 | Sed04g1443 | Sed-Chr4:28946260 | 9.20E-137 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38147 | PF17800 | NPL | 3.90E-14 | CL0055 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g1442 | - | - | - | 0.0 |