Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1442 ATGGAGTTTTGGGGTGTTGAGGTTAAAGCTGGAGAGCCTCTTTCGGTGAGTCCCGGAGAGGAGAAGATATTGCATCTGTCGCAGGCATGCCTTGGAGAGTCCAAGAGCAAAGGAGGTGAACAGGTTTTTATGTATGTCAAGGTTGGCAATCAAAAGCTTGTTCTAGGTACTCTATCCTCAGAGAAATTCCCACAAGTGTCTTTTGATCTGGTGTTTGACGAAGACTTTGAGCTATCTCATAATTGGAAAAATGGAAGTGTCTACTTTACGGGATATACATCTCTCATCCAAGAAGAGGAGGAATCTTATACTGATTCTGAAGAGGATTTATCACTAGCTGCTATAGACAATGGAAAGCCGGAGCCACAGCCAAAGAAAGATGCAAAGCCCGAAACTTCTGGAACCAAGAAAAAAGTGCAGATTGTAGAACCAAACAAAGCTGCCTCAAATTCTGTTCTTGACCATAAGAAGAATGAAGATAGTTCTGATGAAGATGATGATGAGGATGAAGACAGCTCTGATGATGAGAATGCAGAGGGAGGTGAAAAAGACAACAGCGATGATGAAAATAAAATTTCCGAGGATGACAGTGATGATGAAGAAGATGAGGACTCGGATGACAGTTCAGAAGAGGACGAGCAGACACCCATAAAGGCTGAAGCAAGCAAGAAGAGACCTCTAGAGTCCGCTAATAAAACGCCTGCACCTGATAAGAAGGCAAAATTCGTCACTCCGCAAAAAACTGATGGCAAGAAAGGTGTTCCTCACGTAGATACTCCTCATCCTTCAAAGAAGGCTGGGAAAACTCCTGCTGCTAGTGACCAAAATAAACAGCAAACTCCGAAATCAGCTGCTGGTGCATTCCCCTGCAAATCTTGCAACAGGGCATTTGGCTCTGAAACGGCCTTACAATCCCACTCAAAAGCTAAGCACAGTACTGAGAAGTGA 948 43.88 MEFWGVEVKAGEPLSVSPGEEKILHLSQACLGESKSKGGEQVFMYVKVGNQKLVLGTLSSEKFPQVSFDLVFDEDFELSHNWKNGSVYFTGYTSLIQEEEESYTDSEEDLSLAAIDNGKPEPQPKKDAKPETSGTKKKVQIVEPNKAASNSVLDHKKNEDSSDEDDDEDEDSSDDENAEGGEKDNSDDENKISEDDSDDEEDEDSDDSSEEDEQTPIKAEASKKRPLESANKTPAPDKKAKFVTPQKTDGKKGVPHVDTPHPSKKAGKTPAASDQNKQQTPKSAAGAFPCKSCNRAFGSETALQSHSKAKHSTEK 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28946260 28951955 - Sed0003899.1 Sed04g1442 710045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1442 315 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Sed04g1442 315 MobiDBLite consensus disorder prediction 161 183 - -
Sed04g1442 315 Gene3D Nucleoplasmin core domain 1 100 - -
Sed04g1442 315 MobiDBLite consensus disorder prediction 120 136 - -
Sed04g1442 315 MobiDBLite consensus disorder prediction 269 285 - -
Sed04g1442 315 MobiDBLite consensus disorder prediction 212 235 - -
Sed04g1442 315 MobiDBLite consensus disorder prediction 191 211 - -
Sed04g1442 315 MobiDBLite consensus disorder prediction 114 293 - -
Sed04g1442 315 MobiDBLite consensus disorder prediction 242 263 - -
Sed04g1442 315 ProSitePatterns Zinc finger C2H2 type domain signature. 290 311 IPR013087 -
Sed04g1442 315 Pfam C2H2-type zinc finger 287 312 IPR013087 -
Sed04g1442 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 288 315 IPR013087 -
Sed04g1442 315 FunFam Histone deacetylase HDT1 1 98 - -
Sed04g1442 315 Gene3D Classic Zinc Finger 286 314 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3157 Sed-Chr1:56373465 Sed04g1442 Sed-Chr4:28946260 8.80E-38 dispersed
Sed04g1442 Sed-Chr4:28946260 Sed05g1239 Sed-Chr5:20851788 1.70E-21 dispersed
Sed04g1442 Sed-Chr4:28946260 Sed04g1443 Sed-Chr4:28946260 9.20E-137 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38147 PF17800 NPL 3.90E-14 CL0055 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1442 - - - 0.0