Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1443 ATGAAAAATCAAGAAAATAATTTCTGCTGGAAACCGAGAGTGGTTTTGTATGTCATGTGGCTACTCTACTGCCTAGTAGTTCTTGGTGGATATGCTGGATGCTGGAGTTACTACACTTTCTCAGTTATCTTAATTCTTACATGTCAACGTGTTGAGGTTAAAGCTGGAGAGCCTCTTTCGGTGAGTCCCGGAGAGGAGAAGATATTGCATCTGTCGCAGGCATGCCTTGGAGAGTCCAAGAGCAAAGGAGGTGAACAGGTTTTTATGTATGTCAAGGTTGGCAATCAAAAGCTTGTTCTAGGTACTCTATCCTCAGAGAAATTCCCACAAGTGTCTTTTGATCTGGTGTTTGACGAAGACTTTGAGCTATCTCATAATTGGAAAAATGGAAGTGTCTACTTTACGGGATATACATCTCTCATCCAAGAAGAGGAGGAATCTTATACTGATTCTGAAGAGGATTTATCACTAGCTGCTATAGACAATGGAAAGCCGGAGCCACAGCCAAAGAAAGATGCAAAGCCCGAAACTTCTGGAACCAAGAAAAAAGTGCAGATTGTAGAACCAAACAAAGCTGCCTCAAATTCTGTTCTTGACCATAAGAAGAATGAAGATAGTTCTGATGAAGATGATGATGAGGATGAAGACAGCTCTGATGATGAGAATGCAGAGGGAGGTGAAAAAGACAACAGCGATGATGAAAATAAAATTTCCGAGGATGACAGTGATGATGAAGAAGATGAGGACTCGGATGACAGTTCAGAAGAGGACGAGCAGACACCCATAAAGGCTGAAGCAAGCAAGAAGAGACCTCTAGAGTCCGCTAATAAAACGCCTGCACCTGATAAGAAGGCAAAATTCGTCACTCCGCAAAAAACTGATGGCAAGAAAGGTGTTCCTCACGTAGATACTCCTCATCCTTCAAAGAAGGCTGGGAAAACTCCTGCTGCTAGTGACCAAAATAAACAGCAAACTCCGAAATCAGCTGCTGGTGCATTCCCCTGCAAATCTTGCAACAGGGCATTTGGCTCTGAAACGGCCTTACAATCCCACTCAAAAGCTAAGCACAGTACTGAGAAGTGA 1083 43.03 MKNQENNFCWKPRVVLYVMWLLYCLVVLGGYAGCWSYYTFSVILILTCQRVEVKAGEPLSVSPGEEKILHLSQACLGESKSKGGEQVFMYVKVGNQKLVLGTLSSEKFPQVSFDLVFDEDFELSHNWKNGSVYFTGYTSLIQEEEESYTDSEEDLSLAAIDNGKPEPQPKKDAKPETSGTKKKVQIVEPNKAASNSVLDHKKNEDSSDEDDDEDEDSSDDENAEGGEKDNSDDENKISEDDSDDEEDEDSDDSSEEDEQTPIKAEASKKRPLESANKTPAPDKKAKFVTPQKTDGKKGVPHVDTPHPSKKAGKTPAASDQNKQQTPKSAAGAFPCKSCNRAFGSETALQSHSKAKHSTEK 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28946260 28950931 - Sed0003899.2 Sed04g1443 710046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1443 360 ProSitePatterns Zinc finger C2H2 type domain signature. 335 356 IPR013087 -
Sed04g1443 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 333 360 IPR013087 -
Sed04g1443 360 MobiDBLite consensus disorder prediction 206 228 - -
Sed04g1443 360 MobiDBLite consensus disorder prediction 165 181 - -
Sed04g1443 360 Gene3D Nucleoplasmin core domain 47 145 - -
Sed04g1443 360 MobiDBLite consensus disorder prediction 257 280 - -
Sed04g1443 360 FunFam Histone deacetylase HDT1 46 143 - -
Sed04g1443 360 Pfam Nucleoplasmin-like domain 51 138 IPR041232 -
Sed04g1443 360 MobiDBLite consensus disorder prediction 287 308 - -
Sed04g1443 360 MobiDBLite consensus disorder prediction 236 256 - -
Sed04g1443 360 Gene3D Classic Zinc Finger 331 359 - -
Sed04g1443 360 MobiDBLite consensus disorder prediction 159 338 - -
Sed04g1443 360 MobiDBLite consensus disorder prediction 314 330 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1443 Sed-Chr4:28946260 Sed05g1239 Sed-Chr5:20851788 1.50E-21 dispersed
Sed04g1442 Sed-Chr4:28946260 Sed04g1443 Sed-Chr4:28946260 9.20E-137 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38148 PF17800 NPL 4.60E-11 CL0055 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1443 - - - 0.0