Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1447 ATGGAAATGCCCGGCAGAAGGTTGAATTATACACTTCTCAGTCAAATTCCCGACGACCAACACATCGGCGGCGTTGCCGGAGCTTCGTCATCGTTGATCGAATCATCTTCAGGCGAGGGGAAGAACGAGAAGAGGAAGTTGGATTGGGAAGGCGGTGCTGATCCTAGGCAGGCTAATTGGATCGGAAACATGTACTCGGCCTTTGGTATGCAGAGGCAGTCCAGTGGAAGCAGCTTTGGAGAGAGCTCCATCTCCGGGGAGTATTATGCGCAGTCCCCGTCCACTACGGCGGCTAACGAGACGGATGATGTGCTCGGGATTGGCGGCGATTCTAGGGCTCAGGCAGTCGAGATGGCCGCCGGGACTGGAGGATCTTATGGTAAGAGCTGGGCGCAACAGACGGAGGAGAGTTATCAGCTGCAGTTGGCATTGGTGCTTCGGCTTTCCTCAGCGGCGACTTGTGCCGATGATCCTAATTTCTTAAATCCATTTCAGGATGATTCAGCTTTGAGGAGGTCGATTAGCTCTGCTGAAGCTGTGTCTCATCGATTTTGGGTGAATGGTTGTCTATCATACTATGACAAAGTTCCTGATGGGTTTTATCTAATCCATGGAATGGATCCATATGTGTGGTCCATGTGCACCAGCCTGCCTGAAAATGATCGCATGCCATCGATCGAATCTCTAAAGTCCGTTGATTCTAGAACAGATTCTTCTATTGAAGTTGTTTTGATTGATCAACGCGCTGATCCAAACTTAAAAGACCTCCAAAATCGGGTACAAAGCATTTCTTGCAGTTCTATAACGACAAAAGAGGTTGTAGACCAGCTTGCAAAACTTGTCTGTAGGAGTTTGGGTGGCTCAGTTTCCGGAGAAGATATGTTGATGTCCATCTGGAAGGATTGCAGTGATAACTTGAAGGAGACCTTAGGCTCAGTGGTTGTTCCTCTTGGTGCACTCTCTGTAGGACTCTGCCGGCATCGTGCTCTTCTTTTCAAAGTGTTAGCTGATACAATTGATTTACCCTGTCGAGTAGCCAAGGGCTGTAAATATTGCTCATGCCATGATTCATCTTCTTGTCTTGTTCAGTTTGGGCTTGACAAGGAGTATCTGGTCGATTTAATTGGCAATCCTGGTTGTTTATATGAGCCTGATTCCTTACTCAATGGTCCATCCTCCATTTTGATCTCCTCGCCATTGCGATTTCCACGACTAAAGCCAGTAGAGCCGGCTGTTGATTTTAGGTCACTGGCTGAACAGTACTTTTCAGATTGCCAGTTGCTTAACATTGTTTTCGATGAAAGTTCCTCAGAAAGTACTGTGGATGGAGAAGATGGCGCATTGCATCAAAAGCAGTTTGATAGGAAGTTCACAAACAGAAACAACCAAATGCTTGTCACTGGTGATCATGATGAAAAATCCATTTTACTGCCTGCAAAAAATTCGCAGCCTAACTCGAAAGACAGAGATTTCCAACTATTTAAACCGCTACAACCAACTCACCTGGTTGAGGATCCGGTCGTGCTGAAGAACAGCCGTAGAAATGTGCAGTCACTTTTTGATATGCCCCAGCCAAGGATGGATTCTACTATGGACGTGAGGTTTGCACATGGAGGTCAGCCAATACCAACCACTCTGAGAAAAACACTTCCCCTTGGTACGGAGGATTTGGACATTCCATGGGATGATCTTGAATTAAAAGAACGAATTGGAGCAGGCTCCTTCGGAACTGTACATCGTGCTGATTGGAATGGATCGGAAGTTGCTGTGAAGATTCTCACAGAACAAGACTTCCATCCTGAACGTGTTAGTGAGTTTCTGAGAGAGGTTGCTATCATGAAATCCTTGCGACATCCTAATATTGTACTTTTTATGGGTGCCGTGACCAAGCCACCAAACCTGTCCATTGTCACTGAGTATCTATCAAGAGGTAGCTTGTATAGACTTTTGCATAAGTCGGGTGTCAAAGACATAGATGAAACACGCCGGATAAATATGGCTTTTGATGTGGCTAAGGGAATGAACTATCTCCATAGACGTGACCCTCCAATTGTTCATCGTGATTTAAAATCACCAAATCTTTTAGTCGACAAGAAGTATACAGTAAAGGTTTGTGATTTTGGTCTTTCCCGCTTAAAGGCACGCACATTTCTTTCATCAAAATCTGCTGCTGGAACACCTGAGTGGATGGCACCAGAAGTACTACGTGATGAGCCCTCAAATGAAAAATCAGATGTTTACAGCTTTGGGGTGATTTTGTGGGAATTGGCAACTTTGCAACAGCCATGGTGTAATCTCAACCCAGCTCAGGTTGTTGCAGCTGTTGGATTTAAGGGCAGAAGGCTTGAAATCCCACGTGATGTAAATCCCATATTGGCTTCCTTAATAGTGGATTGCTGGGCAGACGAGCCGTGGAAGCGTCCATCTTTTACCCGCATAATGGAAATTTTGAAGCCAATGACTAAACAAGCACCGCCTCAACAAGGTCGTGCGAACACGCTATTGGTTATGTGA 2514 45.7 MEMPGRRLNYTLLSQIPDDQHIGGVAGASSSLIESSSGEGKNEKRKLDWEGGADPRQANWIGNMYSAFGMQRQSSGSSFGESSISGEYYAQSPSTTAANETDDVLGIGGDSRAQAVEMAAGTGGSYGKSWAQQTEESYQLQLALVLRLSSAATCADDPNFLNPFQDDSALRRSISSAEAVSHRFWVNGCLSYYDKVPDGFYLIHGMDPYVWSMCTSLPENDRMPSIESLKSVDSRTDSSIEVVLIDQRADPNLKDLQNRVQSISCSSITTKEVVDQLAKLVCRSLGGSVSGEDMLMSIWKDCSDNLKETLGSVVVPLGALSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCSCHDSSSCLVQFGLDKEYLVDLIGNPGCLYEPDSLLNGPSSILISSPLRFPRLKPVEPAVDFRSLAEQYFSDCQLLNIVFDESSSESTVDGEDGALHQKQFDRKFTNRNNQMLVTGDHDEKSILLPAKNSQPNSKDRDFQLFKPLQPTHLVEDPVVLKNSRRNVQSLFDMPQPRMDSTMDVRFAHGGQPIPTTLRKTLPLGTEDLDIPWDDLELKERIGAGSFGTVHRADWNGSEVAVKILTEQDFHPERVSEFLREVAIMKSLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKSGVKDIDETRRINMAFDVAKGMNYLHRRDPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKARTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWCNLNPAQVVAAVGFKGRRLEIPRDVNPILASLIVDCWADEPWKRPSFTRIMEILKPMTKQAPPQQGRANTLLVM 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29042025 29060589 + Sed0021835.1 Sed04g1447 710050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1447 837 FunFam Serine/threonine-protein kinase CTR1 643 827 - -
Sed04g1447 837 MobiDBLite consensus disorder prediction 38 52 - -
Sed04g1447 837 FunFam Serine/threonine-protein kinase isoform 1 554 642 - -
Sed04g1447 837 SUPERFAMILY Protein kinase-like (PK-like) 545 817 IPR011009 -
Sed04g1447 837 MobiDBLite consensus disorder prediction 21 53 - -
Sed04g1447 837 PRINTS Tyrosine kinase catalytic domain signature 638 651 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1447 837 PRINTS Tyrosine kinase catalytic domain signature 788 810 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1447 837 PRINTS Tyrosine kinase catalytic domain signature 678 696 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1447 837 PRINTS Tyrosine kinase catalytic domain signature 744 766 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1447 837 PRINTS Tyrosine kinase catalytic domain signature 725 735 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1447 837 ProSiteProfiles Protein kinase domain profile. 564 821 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1447 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 684 696 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1447 837 PANTHER SERINE-THREONINE PROTEIN KINASE 122 820 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed04g1447 837 Gene3D Transferase(Phosphotransferase) domain 1 643 831 - -
Sed04g1447 837 Gene3D Phosphorylase Kinase; domain 1 557 642 - -
Sed04g1447 837 ProSitePatterns Protein kinases ATP-binding region signature. 570 591 IPR017441 GO:0005524(InterPro)
Sed04g1447 837 SMART serkin_6 564 821 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1447 837 Pfam Protein tyrosine and serine/threonine kinase 564 817 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1447 837 Pfam Ethylene-responsive protein kinase Le-CTR1 177 381 - -
Sed04g1447 837 CDD STKc_MAP3K-like 570 817 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1447 Sed-Chr4:29042025 Sed14g0331 Sed-Chr14:3397525 9.80E-287 dispersed
Sed14g0580 Sed-Chr14:5812680 Sed04g1447 Sed-Chr4:29042025 1.50E-23 dispersed
Sed14g0581 Sed-Chr14:5812680 Sed04g1447 Sed-Chr4:29042025 1.40E-23 dispersed
Sed14g0330 Sed-Chr14:3397525 Sed04g1447 Sed-Chr4:29042025 7.00E-290 wgd
Sed02g0567 Sed-Chr2:43317856 Sed04g1447 Sed-Chr4:29042025 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79001 PF07714 PK_Tyr_Ser-Thr 1.10E-69 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1447 K14510 - csv:101208452 1432.93