Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g1451 | ATGCAAATGGAGAGCTCGCGAAGACCTTTCGATCGAGCTCGGGAACCGGGTTTGAAGAAGCCCCGACTCGGCGATGAGGCCGAGCGCGGCGGGAGCTTCAACGCCCGGCCGTTTCCGCAGCGACCAGTTGCTTCGGGGATGGGTATCGTGCAACCCAGATTTCGAGCTGGTGATAGAGATTTGGAAAGTGGGTATCAGCCTCAGCCGCCGCCCCATCAGGAGCTTGTTAGCCAGTACAGGACAGCCCTTGCCGAGCTCACTTTCAATTCCAAACCAATCATCACCAATTTGACCATAATCGCCGGTGAAAATCTTCAGGCTGCCAAATTCATCTCTGCCGCCGTTTGCTCCAACGTTATCGAGGTTTCCAGTGAGCAAAAGCTACCATCACTTTATCTTTTGGACAGTATTGTGAAGAATATTGGAAGAGATTACATAAAATACTTTGCAACAAGACTGCCTGAGGTATTCTGCAAAGCTTATAGGCAAGTTGACCCTTCCTTACAATCAAGTATGCGGCATCTTTTTGGCACCTGGAAAGGAGTGTTTCCTCCTCAGACGCTGCAGGTTATTGAGAAAGAACTTGGCTTCGTTACCAGCAGTAGTTCTTCTTCTGGGACCACAGCGTCAAAGCCAGATTTGCAGGCGCAGCGTCCACCCCATAGTATCCATGTAAATCCCAAGTATATAGAGAGGCAACGGCTTCAGCAGTCAGGCAGGGTGAAAGGAATGACCAGTGATGCTACTATTCCAACAACAAATGTAACTCAGGATGTTTCCCAAGCCAAAATTAGCACTGGACGTCCATGGGCAGATGCTCCAATTAAAGACCTTGATATTCAGCGTCCACTTAGAGATGCACACGGTATGGCACAAGAGAAGAACATCACAGCTGCATATGCTGCAGACTACGAATATGGTTCTGATCTTTCAAGGACTCCAGGTATGGGAAGAAGGGTTTTTGATGAAGGCCGAGACAAACCTTGGTCTTCAGCTGGAAGCAATTTGGCAGAGAAGTTACCTGGCCAAAGAAATGGGTTTAACATCAAGCTTGGATATGAAAATCTTGTTCCCAAGTCTGCAAACCCTGGTGCGCGTTTATTGCCCACGCAAAATTCTTCAAGCAACAACAACCGAGTATCGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTTTGTGTGGGGTGAAATGTCTATGTTGAAAAATCATGGTGCATCTGCCATTGCCAGAAGCACTACAAAAGATCAATGGTCTCCTGAGGACTCTGATAATTCGGGTATTGAAAATAAGCCATTCGGCATACGAGATACTGGGAGAAGTTTTGATAGAGAAGCTTCCAGTGATTCACAATCATCTGAGCAGAGAGAACTAGGGGATTCTGGACAGCAAAGGTCATCAATGTGGCAAATACAGGAGCCAATATCTATGGATGGGCTGAGAGGCGGGGTGCCTAGAAAGAATTCAGCTCAGTCAGGAGGTTATGGTGCCACCCTGACTGCACTGTCAGGTGCCAACTCTCCTGTGGATCAAATGGGAGGTCGACCACAAATTACATCATCTAATATTGGAGCTTCAGAACATGGGTTTCTGAAAAAAGGGGGTTCAGGGTCCATTGGGAGTGGGACTGTAGGCCACCAAAGATTTCCATCACAAAGTGTTGCGTTCCCATTAGGACAGCCACCCTTGCACCAACGTCCCCCTTCACCATTATTAGTGGATCGTGCTCCTCATCAAATGCCGGAGCATAAAACTTCTTCATTTTCTAAGCTTGACCCACGTAGAAGGCATTTACAGGATGCTTCACTTGGCCGGCATTCCAGCATTCGGCTAGATAACCTTCATAAACCACAGCCCCAGGACCTTCAAGCTTCAACTTCATCCATACCTGCTTCTCCACCCAGACACCAGTTATCTTTGTCCGAGTCACTAAAACCCGATGTCAGGCAGTCAGAACTTTCTAGTCAGCATGACGTATCAATTCCAGGCACTGATTTTGGACCTCCCTCATTAGCTGGGAAAGTTCCAGATCGTTTACCTGCAGAAATTTTGGGAGAGCCAAGTACTAGTAGTCTGTTGGCTGCTGTAATGAAGAGTGGACTTTTCTCCAACCATTCAATGACCAGCAGCATGCAGCAGAATATCAACTTCCGAGATGTGGGAAATACACAGTCCCATTCAAACAACAAACCTCCTCTACCAAGCCGGTCTTCTCCTTCCCATACTCGGTCTACAGTGCCAAAGACTGTGGGAGAATCTTCATTAGGTTCTCCATCTCTTGAAAGCCCATCAGCTCTGGTTAAGCTATCCCAGACTAAGGCAGAAGAGAAACCGTTGCCGTCTGATCTGCTTCCACCTTCATCTCCTATGAATAGTGAATCCACAGAAACTTCAAATGTGGTAAACGATGCTTCGAGTCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGCTTTATAACTGCTTCAAAAGGTGAATTAACAAATAGCGCGGCATCCCAGAAATCTGCCCAGCATGAAATTATGAAGTCAGGGGATGCTGTGACTTGTTCTATACCAGTTTCTTCCATCCCTGTTACTTCTTCCTGTCAATCATCTATGAGACTTGAATCACCTTCTTCAACTGCTAAGAGCTCCTCTAGTCCACTTCCATCCGCCACAACTGAGATAAACAACCTCATAGGCTTTGAATTCACTTCACATGTTATTCGCAAATTTCATCCATCTGTGATCAGTGGACTCTTTGAAGATATTCCATATCAATGTAAGATATGTAGTCAGCGACTGAGAGTTGAAGAACAGTTGGATACACACTTGCAGTGGCATACGTTAAGAACTGAGGAAAACGATTCAAATAGGGCGCCAAGTAGATGGTATCCAAGTTCAGATGATTGGGTTTCTGGAAATGCTATACTTTTACTTGATGCTGTCACTTCTCTGGACAAGTTTGACATGATGGAAGAACATAACGAGCCAATGGTTCCTGCAGATGAAGATCAATTTGCCTGTGCTTTATGTGGTGATCTTTTTGAAGATTTTTATAGTCAAGAGTTTAGTAAGTGGATGTTCAAAGGAGCAATGTATATCACCATCCCATCAGCGGGCAGTGAGGTAGGAAGCACAAATGAACAAGTTGCTAGAGGACCCATTGTGCACACAAATTGTATAACTGAAAGTTCAGTATATGACTTGGGACTGGCAACTGATATTAAGAAGGAAATGGATGTTTGA | 3234 | 45.64 | MQMESSRRPFDRAREPGLKKPRLGDEAERGGSFNARPFPQRPVASGMGIVQPRFRAGDRDLESGYQPQPPPHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKFISAAVCSNVIEVSSEQKLPSLYLLDSIVKNIGRDYIKYFATRLPEVFCKAYRQVDPSLQSSMRHLFGTWKGVFPPQTLQVIEKELGFVTSSSSSSGTTASKPDLQAQRPPHSIHVNPKYIERQRLQQSGRVKGMTSDATIPTTNVTQDVSQAKISTGRPWADAPIKDLDIQRPLRDAHGMAQEKNITAAYAADYEYGSDLSRTPGMGRRVFDEGRDKPWSSAGSNLAEKLPGQRNGFNIKLGYENLVPKSANPGARLLPTQNSSSNNNRVSSTNWKNSEEEEFVWGEMSMLKNHGASAIARSTTKDQWSPEDSDNSGIENKPFGIRDTGRSFDREASSDSQSSEQRELGDSGQQRSSMWQIQEPISMDGLRGGVPRKNSAQSGGYGATLTALSGANSPVDQMGGRPQITSSNIGASEHGFLKKGGSGSIGSGTVGHQRFPSQSVAFPLGQPPLHQRPPSPLLVDRAPHQMPEHKTSSFSKLDPRRRHLQDASLGRHSSIRLDNLHKPQPQDLQASTSSIPASPPRHQLSLSESLKPDVRQSELSSQHDVSIPGTDFGPPSLAGKVPDRLPAEILGEPSTSSLLAAVMKSGLFSNHSMTSSMQQNINFRDVGNTQSHSNNKPPLPSRSSPSHTRSTVPKTVGESSLGSPSLESPSALVKLSQTKAEEKPLPSDLLPPSSPMNSESTETSNVVNDASSPISNLLSSLVAKGFITASKGELTNSAASQKSAQHEIMKSGDAVTCSIPVSSIPVTSSCQSSMRLESPSSTAKSSSSPLPSATTEINNLIGFEFTSHVIRKFHPSVISGLFEDIPYQCKICSQRLRVEEQLDTHLQWHTLRTEENDSNRAPSRWYPSSDDWVSGNAILLLDAVTSLDKFDMMEEHNEPMVPADEDQFACALCGDLFEDFYSQEFSKWMFKGAMYITIPSAGSEVGSTNEQVARGPIVHTNCITESSVYDLGLATDIKKEMDV | 1077 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 29140885 | 29149845 | - | Sed0017154.1 | Sed04g1451 | 710054 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g1451 | 1077 | MobiDBLite | consensus disorder prediction | 719 | 802 | - | - | |
Sed04g1451 | 1077 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 923 | 943 | IPR013087 | - | |
Sed04g1451 | 1077 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Sed04g1451 | 1077 | MobiDBLite | consensus disorder prediction | 362 | 387 | - | - | |
Sed04g1451 | 1077 | MobiDBLite | consensus disorder prediction | 608 | 674 | - | - | |
Sed04g1451 | 1077 | MobiDBLite | consensus disorder prediction | 618 | 661 | - | - | |
Sed04g1451 | 1077 | MobiDBLite | consensus disorder prediction | 409 | 426 | - | - | |
Sed04g1451 | 1077 | FunFam | polyadenylation and cleavage factor homolog 4 | 68 | 196 | - | - | |
Sed04g1451 | 1077 | MobiDBLite | consensus disorder prediction | 506 | 526 | - | - | |
Sed04g1451 | 1077 | MobiDBLite | consensus disorder prediction | 577 | 594 | - | - | |
Sed04g1451 | 1077 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 921 | 948 | IPR013087 | - | |
Sed04g1451 | 1077 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Sed04g1451 | 1077 | MobiDBLite | consensus disorder prediction | 436 | 451 | - | - | |
Sed04g1451 | 1077 | MobiDBLite | consensus disorder prediction | 452 | 467 | - | - | |
Sed04g1451 | 1077 | SMART | 558neu5 | 74 | 196 | IPR006569 | - | |
Sed04g1451 | 1077 | MobiDBLite | consensus disorder prediction | 506 | 594 | - | - | |
Sed04g1451 | 1077 | MobiDBLite | consensus disorder prediction | 719 | 769 | - | - | |
Sed04g1451 | 1077 | MobiDBLite | consensus disorder prediction | 409 | 467 | - | - | |
Sed04g1451 | 1077 | MobiDBLite | consensus disorder prediction | 200 | 221 | - | - | |
Sed04g1451 | 1077 | SUPERFAMILY | ENTH/VHS domain | 71 | 193 | IPR008942 | - | |
Sed04g1451 | 1077 | CDD | CID_Pcf11 | 76 | 188 | IPR047415 | - | |
Sed04g1451 | 1077 | MobiDBLite | consensus disorder prediction | 365 | 387 | - | - | |
Sed04g1451 | 1077 | MobiDBLite | consensus disorder prediction | 786 | 802 | - | - | |
Sed04g1451 | 1077 | MobiDBLite | consensus disorder prediction | 200 | 215 | - | - | |
Sed04g1451 | 1077 | MobiDBLite | consensus disorder prediction | 540 | 554 | - | - | |
Sed04g1451 | 1077 | ProSiteProfiles | CID domain profile. | 71 | 199 | IPR006569 | - | |
Sed04g1451 | 1077 | MobiDBLite | consensus disorder prediction | 864 | 886 | - | - | |
Sed04g1451 | 1077 | Pfam | CID domain | 81 | 189 | IPR006569 | - | |
Sed04g1451 | 1077 | Gene3D | - | 68 | 196 | IPR008942 | - | |
Sed04g1451 | 1077 | PANTHER | PRE-MRNA CLEAVAGE COMPLEX II | 66 | 1074 | IPR045154 | GO:0000993(PANTHER)|GO:0000993(InterPro)|GO:0003729(InterPro)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0005849(PANTHER)|GO:0006369(PANTHER)|GO:0006369(InterPro)|GO:0006378(PANTHER)|GO:0031124(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g1451 | Sed-Chr4:29140885 | Sed08g2350 | Sed-Chr8:36827095 | 3.30E-69 | dispersed | |
Sed04g1451 | Sed-Chr4:29140885 | Sed04g1452 | Sed-Chr4:29140885 | 0.00E+00 | tandem | |
Sed02g0563 | Sed-Chr2:43295285 | Sed04g1451 | Sed-Chr4:29140885 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g1451 | K14400 | - | csv:101223169 | 1605.88 |