Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1451 ATGCAAATGGAGAGCTCGCGAAGACCTTTCGATCGAGCTCGGGAACCGGGTTTGAAGAAGCCCCGACTCGGCGATGAGGCCGAGCGCGGCGGGAGCTTCAACGCCCGGCCGTTTCCGCAGCGACCAGTTGCTTCGGGGATGGGTATCGTGCAACCCAGATTTCGAGCTGGTGATAGAGATTTGGAAAGTGGGTATCAGCCTCAGCCGCCGCCCCATCAGGAGCTTGTTAGCCAGTACAGGACAGCCCTTGCCGAGCTCACTTTCAATTCCAAACCAATCATCACCAATTTGACCATAATCGCCGGTGAAAATCTTCAGGCTGCCAAATTCATCTCTGCCGCCGTTTGCTCCAACGTTATCGAGGTTTCCAGTGAGCAAAAGCTACCATCACTTTATCTTTTGGACAGTATTGTGAAGAATATTGGAAGAGATTACATAAAATACTTTGCAACAAGACTGCCTGAGGTATTCTGCAAAGCTTATAGGCAAGTTGACCCTTCCTTACAATCAAGTATGCGGCATCTTTTTGGCACCTGGAAAGGAGTGTTTCCTCCTCAGACGCTGCAGGTTATTGAGAAAGAACTTGGCTTCGTTACCAGCAGTAGTTCTTCTTCTGGGACCACAGCGTCAAAGCCAGATTTGCAGGCGCAGCGTCCACCCCATAGTATCCATGTAAATCCCAAGTATATAGAGAGGCAACGGCTTCAGCAGTCAGGCAGGGTGAAAGGAATGACCAGTGATGCTACTATTCCAACAACAAATGTAACTCAGGATGTTTCCCAAGCCAAAATTAGCACTGGACGTCCATGGGCAGATGCTCCAATTAAAGACCTTGATATTCAGCGTCCACTTAGAGATGCACACGGTATGGCACAAGAGAAGAACATCACAGCTGCATATGCTGCAGACTACGAATATGGTTCTGATCTTTCAAGGACTCCAGGTATGGGAAGAAGGGTTTTTGATGAAGGCCGAGACAAACCTTGGTCTTCAGCTGGAAGCAATTTGGCAGAGAAGTTACCTGGCCAAAGAAATGGGTTTAACATCAAGCTTGGATATGAAAATCTTGTTCCCAAGTCTGCAAACCCTGGTGCGCGTTTATTGCCCACGCAAAATTCTTCAAGCAACAACAACCGAGTATCGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTTTGTGTGGGGTGAAATGTCTATGTTGAAAAATCATGGTGCATCTGCCATTGCCAGAAGCACTACAAAAGATCAATGGTCTCCTGAGGACTCTGATAATTCGGGTATTGAAAATAAGCCATTCGGCATACGAGATACTGGGAGAAGTTTTGATAGAGAAGCTTCCAGTGATTCACAATCATCTGAGCAGAGAGAACTAGGGGATTCTGGACAGCAAAGGTCATCAATGTGGCAAATACAGGAGCCAATATCTATGGATGGGCTGAGAGGCGGGGTGCCTAGAAAGAATTCAGCTCAGTCAGGAGGTTATGGTGCCACCCTGACTGCACTGTCAGGTGCCAACTCTCCTGTGGATCAAATGGGAGGTCGACCACAAATTACATCATCTAATATTGGAGCTTCAGAACATGGGTTTCTGAAAAAAGGGGGTTCAGGGTCCATTGGGAGTGGGACTGTAGGCCACCAAAGATTTCCATCACAAAGTGTTGCGTTCCCATTAGGACAGCCACCCTTGCACCAACGTCCCCCTTCACCATTATTAGTGGATCGTGCTCCTCATCAAATGCCGGAGCATAAAACTTCTTCATTTTCTAAGCTTGACCCACGTAGAAGGCATTTACAGGATGCTTCACTTGGCCGGCATTCCAGCATTCGGCTAGATAACCTTCATAAACCACAGCCCCAGGACCTTCAAGCTTCAACTTCATCCATACCTGCTTCTCCACCCAGACACCAGTTATCTTTGTCCGAGTCACTAAAACCCGATGTCAGGCAGTCAGAACTTTCTAGTCAGCATGACGTATCAATTCCAGGCACTGATTTTGGACCTCCCTCATTAGCTGGGAAAGTTCCAGATCGTTTACCTGCAGAAATTTTGGGAGAGCCAAGTACTAGTAGTCTGTTGGCTGCTGTAATGAAGAGTGGACTTTTCTCCAACCATTCAATGACCAGCAGCATGCAGCAGAATATCAACTTCCGAGATGTGGGAAATACACAGTCCCATTCAAACAACAAACCTCCTCTACCAAGCCGGTCTTCTCCTTCCCATACTCGGTCTACAGTGCCAAAGACTGTGGGAGAATCTTCATTAGGTTCTCCATCTCTTGAAAGCCCATCAGCTCTGGTTAAGCTATCCCAGACTAAGGCAGAAGAGAAACCGTTGCCGTCTGATCTGCTTCCACCTTCATCTCCTATGAATAGTGAATCCACAGAAACTTCAAATGTGGTAAACGATGCTTCGAGTCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGCTTTATAACTGCTTCAAAAGGTGAATTAACAAATAGCGCGGCATCCCAGAAATCTGCCCAGCATGAAATTATGAAGTCAGGGGATGCTGTGACTTGTTCTATACCAGTTTCTTCCATCCCTGTTACTTCTTCCTGTCAATCATCTATGAGACTTGAATCACCTTCTTCAACTGCTAAGAGCTCCTCTAGTCCACTTCCATCCGCCACAACTGAGATAAACAACCTCATAGGCTTTGAATTCACTTCACATGTTATTCGCAAATTTCATCCATCTGTGATCAGTGGACTCTTTGAAGATATTCCATATCAATGTAAGATATGTAGTCAGCGACTGAGAGTTGAAGAACAGTTGGATACACACTTGCAGTGGCATACGTTAAGAACTGAGGAAAACGATTCAAATAGGGCGCCAAGTAGATGGTATCCAAGTTCAGATGATTGGGTTTCTGGAAATGCTATACTTTTACTTGATGCTGTCACTTCTCTGGACAAGTTTGACATGATGGAAGAACATAACGAGCCAATGGTTCCTGCAGATGAAGATCAATTTGCCTGTGCTTTATGTGGTGATCTTTTTGAAGATTTTTATAGTCAAGAGTTTAGTAAGTGGATGTTCAAAGGAGCAATGTATATCACCATCCCATCAGCGGGCAGTGAGGTAGGAAGCACAAATGAACAAGTTGCTAGAGGACCCATTGTGCACACAAATTGTATAACTGAAAGTTCAGTATATGACTTGGGACTGGCAACTGATATTAAGAAGGAAATGGATGTTTGA 3234 45.64 MQMESSRRPFDRAREPGLKKPRLGDEAERGGSFNARPFPQRPVASGMGIVQPRFRAGDRDLESGYQPQPPPHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKFISAAVCSNVIEVSSEQKLPSLYLLDSIVKNIGRDYIKYFATRLPEVFCKAYRQVDPSLQSSMRHLFGTWKGVFPPQTLQVIEKELGFVTSSSSSSGTTASKPDLQAQRPPHSIHVNPKYIERQRLQQSGRVKGMTSDATIPTTNVTQDVSQAKISTGRPWADAPIKDLDIQRPLRDAHGMAQEKNITAAYAADYEYGSDLSRTPGMGRRVFDEGRDKPWSSAGSNLAEKLPGQRNGFNIKLGYENLVPKSANPGARLLPTQNSSSNNNRVSSTNWKNSEEEEFVWGEMSMLKNHGASAIARSTTKDQWSPEDSDNSGIENKPFGIRDTGRSFDREASSDSQSSEQRELGDSGQQRSSMWQIQEPISMDGLRGGVPRKNSAQSGGYGATLTALSGANSPVDQMGGRPQITSSNIGASEHGFLKKGGSGSIGSGTVGHQRFPSQSVAFPLGQPPLHQRPPSPLLVDRAPHQMPEHKTSSFSKLDPRRRHLQDASLGRHSSIRLDNLHKPQPQDLQASTSSIPASPPRHQLSLSESLKPDVRQSELSSQHDVSIPGTDFGPPSLAGKVPDRLPAEILGEPSTSSLLAAVMKSGLFSNHSMTSSMQQNINFRDVGNTQSHSNNKPPLPSRSSPSHTRSTVPKTVGESSLGSPSLESPSALVKLSQTKAEEKPLPSDLLPPSSPMNSESTETSNVVNDASSPISNLLSSLVAKGFITASKGELTNSAASQKSAQHEIMKSGDAVTCSIPVSSIPVTSSCQSSMRLESPSSTAKSSSSPLPSATTEINNLIGFEFTSHVIRKFHPSVISGLFEDIPYQCKICSQRLRVEEQLDTHLQWHTLRTEENDSNRAPSRWYPSSDDWVSGNAILLLDAVTSLDKFDMMEEHNEPMVPADEDQFACALCGDLFEDFYSQEFSKWMFKGAMYITIPSAGSEVGSTNEQVARGPIVHTNCITESSVYDLGLATDIKKEMDV 1077
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29140885 29149845 - Sed0017154.1 Sed04g1451 710054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1451 1077 MobiDBLite consensus disorder prediction 719 802 - -
Sed04g1451 1077 ProSitePatterns Zinc finger C2H2 type domain signature. 923 943 IPR013087 -
Sed04g1451 1077 MobiDBLite consensus disorder prediction 1 29 - -
Sed04g1451 1077 MobiDBLite consensus disorder prediction 362 387 - -
Sed04g1451 1077 MobiDBLite consensus disorder prediction 608 674 - -
Sed04g1451 1077 MobiDBLite consensus disorder prediction 618 661 - -
Sed04g1451 1077 MobiDBLite consensus disorder prediction 409 426 - -
Sed04g1451 1077 FunFam polyadenylation and cleavage factor homolog 4 68 196 - -
Sed04g1451 1077 MobiDBLite consensus disorder prediction 506 526 - -
Sed04g1451 1077 MobiDBLite consensus disorder prediction 577 594 - -
Sed04g1451 1077 ProSiteProfiles Zinc finger C2H2 type domain profile. 921 948 IPR013087 -
Sed04g1451 1077 MobiDBLite consensus disorder prediction 1 45 - -
Sed04g1451 1077 MobiDBLite consensus disorder prediction 436 451 - -
Sed04g1451 1077 MobiDBLite consensus disorder prediction 452 467 - -
Sed04g1451 1077 SMART 558neu5 74 196 IPR006569 -
Sed04g1451 1077 MobiDBLite consensus disorder prediction 506 594 - -
Sed04g1451 1077 MobiDBLite consensus disorder prediction 719 769 - -
Sed04g1451 1077 MobiDBLite consensus disorder prediction 409 467 - -
Sed04g1451 1077 MobiDBLite consensus disorder prediction 200 221 - -
Sed04g1451 1077 SUPERFAMILY ENTH/VHS domain 71 193 IPR008942 -
Sed04g1451 1077 CDD CID_Pcf11 76 188 IPR047415 -
Sed04g1451 1077 MobiDBLite consensus disorder prediction 365 387 - -
Sed04g1451 1077 MobiDBLite consensus disorder prediction 786 802 - -
Sed04g1451 1077 MobiDBLite consensus disorder prediction 200 215 - -
Sed04g1451 1077 MobiDBLite consensus disorder prediction 540 554 - -
Sed04g1451 1077 ProSiteProfiles CID domain profile. 71 199 IPR006569 -
Sed04g1451 1077 MobiDBLite consensus disorder prediction 864 886 - -
Sed04g1451 1077 Pfam CID domain 81 189 IPR006569 -
Sed04g1451 1077 Gene3D - 68 196 IPR008942 -
Sed04g1451 1077 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 66 1074 IPR045154 GO:0000993(PANTHER)|GO:0000993(InterPro)|GO:0003729(InterPro)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0005849(PANTHER)|GO:0006369(PANTHER)|GO:0006369(InterPro)|GO:0006378(PANTHER)|GO:0031124(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1451 Sed-Chr4:29140885 Sed08g2350 Sed-Chr8:36827095 3.30E-69 dispersed
Sed04g1451 Sed-Chr4:29140885 Sed04g1452 Sed-Chr4:29140885 0.00E+00 tandem
Sed02g0563 Sed-Chr2:43295285 Sed04g1451 Sed-Chr4:29140885 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1451 K14400 - csv:101223169 1605.88