Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1495 ATGTCCTTCAACCATTTGTCCTCCGCCGCGGTCGCCGACCACCCCCCGAAGCAGCCGATGTTCGAGAAGCCCCTAACTCCCAGCGACGTTGGGAAGCTCAACCGCCTCGTCATCCCGAAGCAATACGCGGAACAATTCTTCCCCCTTTCCCCGACGGGGGGCGACTCGGCCGACAAGGGCTTGCTTCTCACCTTCGAAGACGAGTCCGCAAAGGTGTGGCGCTTTCGTTACTCTTATTGGAACAGTAGCCAGAGCTACGTCTTAACCAAGGGCTGGAGCCGCTACGTCAAAGAGAAGCGCCTTCAGGCTGGTGATGCGGTTGTTTTCCAACGCCACCTCCGTGATCCAGATAGGTTCTTCATTGCTTGGAAGCGCCGCTCTACCGATGCGGTCGCGCCCCCGGGTGACGCTGCTGCTCGCCGCACGGGTTGGACTACAATGTTTTGTTCTTCAAACCCCTATCCTTCTCATTATCCTATTCCTTCACCACCATACCAATCCTTTGATTGTCCTCATGCAGAGTCCTCTGTTCAGAATCATCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGGCTGTTCGGAGTGAACATGGAGTGCCAAACCGACATGTCGGAACCTGAATCCCCATCCATGCTCGGTACCGGGTCCGGTTTGGCTCGAGATCCGACCCGCCACAATTTATACCCGCATTACTCTTCCCCTCTACCTCATCACATGGAATTGAGTTTGGAGCAAGATATGAAGAAAATGAAGTATGAAGGATAA 768 53.91 MSFNHLSSAAVADHPPKQPMFEKPLTPSDVGKLNRLVIPKQYAEQFFPLSPTGGDSADKGLLLTFEDESAKVWRFRYSYWNSSQSYVLTKGWSRYVKEKRLQAGDAVVFQRHLRDPDRFFIAWKRRSTDAVAPPGDAAARRTGWTTMFCSSNPYPSHYPIPSPPYQSFDCPHAESSVQNHQTVSVGNSKILRLFGVNMECQTDMSEPESPSMLGTGSGLARDPTRHNLYPHYSSPLPHHMELSLEQDMKKMKYEG 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29770121 29774408 - Sed0024718.1 Sed04g1495 710098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1495 255 ProSiteProfiles B3 DNA-binding domain profile. 21 127 IPR003340 GO:0003677(InterPro)
Sed04g1495 255 MobiDBLite consensus disorder prediction 203 237 - -
Sed04g1495 255 CDD B3_DNA 19 121 IPR003340 GO:0003677(InterPro)
Sed04g1495 255 Gene3D - 12 136 IPR015300 -
Sed04g1495 255 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 15 198 IPR044800 GO:0003700(InterPro)
Sed04g1495 255 SMART B3_2 21 127 IPR003340 GO:0003677(InterPro)
Sed04g1495 255 SUPERFAMILY DNA-binding pseudobarrel domain 16 122 IPR015300 -
Sed04g1495 255 MobiDBLite consensus disorder prediction 1 25 - -
Sed04g1495 255 Pfam B3 DNA binding domain 21 126 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1495 Sed-Chr4:29770121 Sed13g0861 Sed-Chr13:6369344 3.00E-37 dispersed
Sed04g1495 Sed-Chr4:29770121 Sed13g0860 Sed-Chr13:6369344 3.00E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38156 PF02362 B3 1.10E-27 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1495 K09287 - csv:101214938 342.043