Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1504 ATGGACTCAATGTGCAGCAAATTGTGTTGTGTTTTGGTCTTTGTTTCATTGATAACTTTGAGCTCTGGCAGTTTATCTGCAAACTTTTATAAGAGCTCATGTCCAACGCTACTCTCCATGGTCCGACGTGAAGTCGTAAAAGCAGTGGCTAAAGAGTATAGAATGGGAGCTTCGTTGCTTCGTCTTCACTTTCACGACTGCTTTGTCAATGGATGTGATGCATCGGTGCTACTCGATGACACATCAAATTTCACGGGAGAAAAAACAGCCATCCCAAATAAGGATTCATTGAGAGGTTTTGAAGTTATCGACAAAATAAAAACCACGGTGGAGGCAAGTTGCCCATCTGTGGTTTCGTGTGCTGATATTGTGTCGATTGCAGCTCGAGACTCAGTAGTTGCGCTTGGTGGGCCATCGTGGGTTGTTGGGCTTGGGAGGAGGGACTCCACCACGGCCAGCTTCGACAGCGCCAACAATGACCTCCCCTCTCCCTTCCTCGACCTTCCCGATCTCGTATCTGCCTTCTCCAACAAAGGCTTCGACACAAAAGAATTAGTCGCCCTTTCAGGATCTCACACAATAGGACAAGCCAGGTGCGCCATGTTCCGAGTAAGAGCCCATAACGAAACCACCATTGATTCAGAGTTTGCTGCTTCATTAAGGTCCAACTGCCCTTTCTCCGGCGACGACGACAAGCTTTCCTCTTTGGATCTCGACACCCCTTCCTTGTTCGACAATGCTTATTACAAGAATTTGGTACAAAACAAAGGCCTTCTTCACTCCGACCAAGCCCTCTTCAGCAACGCCTCCGCCGACTCCTTTGTCACCTCTTATTCCGGCGACTCCTCTGCTTTCTTCTCCGACTTCGCCGCCGCCATGGTCAAGATGTCCAACCTTTCCCCACTCACCGGAACCGACGGCCAGATTCGTTCCGATTGCCACAAGATCAATGCCTGA 957 49.22 MDSMCSKLCCVLVFVSLITLSSGSLSANFYKSSCPTLLSMVRREVVKAVAKEYRMGASLLRLHFHDCFVNGCDASVLLDDTSNFTGEKTAIPNKDSLRGFEVIDKIKTTVEASCPSVVSCADIVSIAARDSVVALGGPSWVVGLGRRDSTTASFDSANNDLPSPFLDLPDLVSAFSNKGFDTKELVALSGSHTIGQARCAMFRVRAHNETTIDSEFAASLRSNCPFSGDDDKLSSLDLDTPSLFDNAYYKNLVQNKGLLHSDQALFSNASADSFVTSYSGDSSAFFSDFAAAMVKMSNLSPLTGTDGQIRSDCHKINA 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29922708 29924829 + Sed0023943.1 Sed04g1504 710107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1504 318 Gene3D - 28 313 - -
Sed04g1504 318 PANTHER PEROXIDASE 72-RELATED 11 316 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1504 318 FunFam Peroxidase 162 296 - -
Sed04g1504 318 Pfam Peroxidase 41 280 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1504 318 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Sed04g1504 318 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1504 318 PRINTS Plant peroxidase signature 291 304 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1504 318 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1504 318 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1504 318 PRINTS Plant peroxidase signature 251 268 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1504 318 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1504 318 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1504 318 PRINTS Plant peroxidase signature 235 250 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1504 318 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1504 318 Gene3D Peroxidase, domain 2 162 296 - -
Sed04g1504 318 ProSiteProfiles Plant heme peroxidase family profile. 24 317 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1504 318 FunFam Peroxidase 28 164 - -
Sed04g1504 318 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
Sed04g1504 318 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1504 318 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1504 318 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1504 318 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1504 318 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g1504 318 CDD secretory_peroxidase 25 316 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed04g1504 318 SUPERFAMILY Heme-dependent peroxidases 25 317 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1221 Sed-Chr1:9105304 Sed04g1504 Sed-Chr4:29922708 5.40E-145 dispersed
Sed04g1504 Sed-Chr4:29922708 Sed05g3805 Sed-Chr5:45703213 5.50E-97 dispersed
Sed04g1504 Sed-Chr4:29922708 Sed01g0806 Sed-Chr1:5960997 1.10E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1504 K00430 - csv:101221157 514.998