Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1531 ATGAAGATTCAGTGTAATGTCTGCGAGATTGCTGAGGCGACGGTCCTGTGCTGTGCGGATGAGGCGGCGCTGTGCTGGGCCTGCGATGAGAAGATTCATGCGGCCAATAAGCTCGCTAGCAAGCACCAGAGAGTTCCTCTCACTGGGTCTTCTTCTCAGATGCCCAAATGCGATATCTGCCAGGCTGGTAGTGGCTACATCTTTTGTTTAGAGGATCGAGCATTACTCTGCAGAAAGTGTGATGTTGCTATACACACAGCAAACACTTTTGTAACTGGTCATCAGCGCTTTCTACTCACTGGTGTGAAAGTTGCACTCGAGCCAACTGACCCTGTTTCTTGTTCTTCCATGGCCAAGTCACATACTAGAGAGGAATCAACTGAGACAAAAGTTAGACCGTCGTCTGAAAGGGAATTCTCAATGCCTTCTTCTGACGAACTTAACAGAAGCCTGTCTGTACAAGGTGGATCTGAGGACTTCATGGCAAATAGAACGTTGCTTACTGGAGATTCCGTTTCTGGTGGCTTTTCACAATGGCAAATGGATGAACTTGTTAATCTGACTGGATTCAATCAGGGTTATGAGTATATGGATAATCATAATGGATCATCCAAGGCTGATAGTGGAAAGCTTGGGGATTCTGATTCATCTCAAAGTTTGAGAGCTGCTGATGTTGAACTGGACGGTGACGATGAGTGCTCGGGTCACATTCCAGAGGCTTCCTGGACTGTGCCTCAGATTCCCTCCCCTCCCACAGCATCTGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCTTGTTCTTCAGCAAAGGGTCAACACTCCTCGCGTAACGGTACATTCTCGAAACGAAAGAGGCAGTTCTAG 897 47.05 MKIQCNVCEIAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLTGSSSQMPKCDICQAGSGYIFCLEDRALLCRKCDVAIHTANTFVTGHQRFLLTGVKVALEPTDPVSCSSMAKSHTREESTETKVRPSSEREFSMPSSDELNRSLSVQGGSEDFMANRTLLTGDSVSGGFSQWQMDELVNLTGFNQGYEYMDNHNGSSKADSGKLGDSDSSQSLRAADVELDGDDECSGHIPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSAKGQHSSRNGTFSKRKRQF 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30130908 30134417 + Sed0025476.1 Sed04g1531 710134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1531 298 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 279 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Sed04g1531 298 Gene3D Classic Zinc Finger 1 92 - -
Sed04g1531 298 MobiDBLite consensus disorder prediction 278 298 - -
Sed04g1531 298 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Sed04g1531 298 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Sed04g1531 298 MobiDBLite consensus disorder prediction 114 151 - -
Sed04g1531 298 MobiDBLite consensus disorder prediction 198 218 - -
Sed04g1531 298 MobiDBLite consensus disorder prediction 121 135 - -
Sed04g1531 298 Pfam B-box zinc finger 53 96 IPR000315 GO:0008270(InterPro)
Sed04g1531 298 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Sed04g1531 298 CDD Bbox1_BBX-like 56 99 IPR049808 -
Sed04g1531 298 MobiDBLite consensus disorder prediction 136 151 - -
Sed04g1531 298 CDD Bbox1_BBX-like 5 47 IPR049808 -
Sed04g1531 298 FunFam B-box zinc finger protein 22 1 93 - -
Sed04g1531 298 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1531 Sed-Chr4:30130908 Sed09g0407 Sed-Chr9:3899150 6.20E-34 dispersed
Sed13g0634 Sed-Chr13:4329231 Sed04g1531 Sed-Chr4:30130908 9.20E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38160 PF00643 zf-B_box 3.90E-06 No_clan Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1531 - - - 0.0