Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1548 ATGTCTCTTCGAAGATCGTTTCTCTCTCGGAGATTTTCCTCCAAATCGTCGTTTAGAGATCCAAATGGTGTAGTAGGAGGGGGATCTGCTCGAGTCGCTTCGTCGGAGATCGAACATGGTTCCGGCGGCGACCGGGTTCTGCCGGAATCTGGTTGGGCCTCCATGTTGCCGGAGCTTCTCCGGGAGATCATTCAGCGGGTGGAGGCTTCCGACGACACGTGGCCTAACCGCCGCAATGTTGTTTCCTGTGCTTGTGTCTGTAAGTGCTGGCGGGATGTTACCAAGGAGATCGCTAGGGATGCTTCTCGTTCCGGGAAAATCACTTTCCCTTCTTGCCTCAAACAGCCCGGACCAAGTGATCCTTTGCATCAGTGTCTTATAAAAAGGAACAAGAAGACTTCAACATTCTATCTTTACCTTGCCCTTACACCATCATTTACAGATACGGGGAAATTCCTCTTAGCTGCTCGGAGATATAGACAGGGAGCTCATACTGAGTATATAATATCTCTTGATGCAGAAGACTTATCCCAAGGAAGCAATGCTTATGTGGGGAAGTTAAGCTCCGATTTTCTCGGCACCAATTTTACAATCTATGATAGCCAACCACCACATAATGGTGCAAAGCCATCAAGCAGTAAATCAAGCCGCCGCTTTGCAAGCAAGCAAATTAGCCCACAAGTTTCTGCAGGTAATTTTGAGGTTGGGCAAGTCTCTTACAAATTTAATCTCTTGAAATCAAGAGGCCCGAGGAGAATGATTTGCTCTCTGAAGTGCCCAGTATCAGAAGACACTGGCACTAGCAAACCTTTTGAGTGCTCGAACTCAAACTCAAACTCAATCATGAAGAAATACAAGTCTTTTTCTTCTTCATCTGGGTTAACGATCTTAAGGAACAAGGCTCCTAGGTGGCACGAGCACCTGCAGTGCTGGTGCTTGAATTTTCACGGACGGGTGACGGTAGCATCAGTCAAGAACTTTCAACTTAGCCAGCTAGGAGTTAAAGGGGATGAAGAATCGGTCCTCCTACAGTTTGGAAAGGTTGGCGACGATACCTTTACAATGGATTATAGGCAGCCATTATCAGCTTTCCAGGCTTTTGCTATTTGCCTTACGAGCTTTGGCACGAAGTTGGCGTGTGAGTAG 1146 47.12 MSLRRSFLSRRFSSKSSFRDPNGVVGGGSARVASSEIEHGSGGDRVLPESGWASMLPELLREIIQRVEASDDTWPNRRNVVSCACVCKCWRDVTKEIARDASRSGKITFPSCLKQPGPSDPLHQCLIKRNKKTSTFYLYLALTPSFTDTGKFLLAARRYRQGAHTEYIISLDAEDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSKSSRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMICSLKCPVSEDTGTSKPFECSNSNSNSIMKKYKSFSSSSGLTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLSQLGVKGDEESVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30236640 30241474 - Sed0012800.1 Sed04g1548 710151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1548 381 Pfam Tub family 113 376 IPR000007 -
Sed04g1548 381 SUPERFAMILY Tubby C-terminal domain-like 102 381 IPR025659 -
Sed04g1548 381 ProSitePatterns Tub family signature 1. 315 328 IPR018066 -
Sed04g1548 381 CDD F-box_AtTLP-like 52 96 - -
Sed04g1548 381 PANTHER TUBBY-RELATED 50 380 - -
Sed04g1548 381 PRINTS Tubby superfamily signature 315 331 IPR000007 -
Sed04g1548 381 PRINTS Tubby superfamily signature 359 381 IPR000007 -
Sed04g1548 381 PRINTS Tubby superfamily signature 297 314 IPR000007 -
Sed04g1548 381 PRINTS Tubby superfamily signature 167 183 IPR000007 -
Sed04g1548 381 PRINTS Tubby superfamily signature 338 357 IPR000007 -
Sed04g1548 381 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Sed04g1548 381 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Sed04g1548 381 MobiDBLite consensus disorder prediction 14 46 - -
Sed04g1548 381 ProSitePatterns Tub family signature 2. 366 381 IPR018066 -
Sed04g1548 381 Gene3D Tubby Protein; Chain A 108 381 IPR025659 -
Sed04g1548 381 MobiDBLite consensus disorder prediction 201 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1548 Sed-Chr4:30236640 Sed04g1822 Sed-Chr4:32962645 5.00E-105 dispersed
Sed13g0604 Sed-Chr13:4196530 Sed04g1548 Sed-Chr4:30236640 1.20E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38162 PF01167 Tub 1.40E-102 CL0395 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1548 K19600 - csv:101211968 593.578