Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1559 ATGCCTCTAAACCTCTCTATCCAAACATCCTACATAGTTTCAATCATACCTCAATTGGATCACTTGTTTTCCTGTATAAAAAAAACACAGCCCATTTTAAAGCTGGAAGAAGAAAAGCAAAACAGTCCGAGTCTGGATCCTCCTCAAGGAAATCGCCATCATCATCATCACCACAACCAGATTCCAAATTCAAGACATGTAGAAGGAAAAGAAGAGGAAGAAAACCAAGATTCTCCACTCCACCACCGCCAAGACTACCACCAAGACCCTAACCAGCAATCACATCCCTTCAATGTGCACCAGAATCAGCATCTTTTTCTTCAAACCGCCCATCAAGACCACCAAAATCTACACAATTACTACGCAGCTTTAGATTCACAGCCACAACAGCAACAGCATCAACAGCAACAAACCCCTAAGAAACGCTCTTACTTTCAGCTTCCACCTCATCCAGTGGCGGTACCTACCGCCTCTGCCTCCACTTTCGCCGACCAGAGCATCGAATATGCGAGAAAAATGGGAGAGAATCACCGCCAAACAGCAACGTCGTCAAGGCTGGGGATGAGAGCCGCCGGCGGCGGCGGCGGCGAGATCGTGGAGGTTCAAGGAGGCCACATTGTTCGTTCCACTGGAAGAAAAGATCGTCACAGCAAAGTTTGCACCGCCAAAGGCCCAAGAGACCGCCGGGTTCGCCTCTCTGCCCATACCGCCATCCAGTTCTACGACGTTCAAGACCGCCTCGGCTACGACCGACCCAGTAAAGCTGTAGACTGGCTTATCAAAAAGGCCAAGGCCGCCATTGACGAGCTCGCCGAGCTCCCTGCATGGAGTCCGACCACAGTAAACGCATCCACACAAAGACAGGAGCAGCAGAGTCTAAACGGCGAGAACGAGAATCTACTCTTCAATTCAACCGGTAATCGGAGAGATAGCAGAGTTTCTGAGTTTCCTCTGCAAAATTTGCAGCATACCCAAATGGGGGAAGGCCCAAATAACAGCACTTCTAGCTTTCTCCCACCGTCGTTAGACTCGGACGCTATTGCTGATACCATCAAGTCCTTCTTCCCTATAGGCACGGCGGCCTCGGCGGCGGAGACGACTTCATCGTCCATTCAGTTCCAGAATTACCCACTAGATTTGCTTTCCAGGACGAGTAGCCAGAATCAAGATCTGCGGCTTTCTTTGCAGTCGTTTCAAGACCCAATTGCTATTCACCGGCATCATCATGCTCAGCACCAGAGTCAAAGTCATCAGAATGAGCACGTCCTATTTTCCGGCACCGCCGCGTTAAGCGGGTTTGATGTGACCACCGCTGGTTGGTCTGAGCACAACAACCTCAATCCGGCGGAGATTAGCCGGTTTCCAAGGATAACTTCTTGGAATCCATCTGGTGCAGAAACTGGCGGTGGCCATGGTGGAGCTGGGATTAGGAATACGGGATATGTCTTCAACTCGCCTAACTTGCCAACTGCACTGCCACCTTCGCCACTTGTGCAACCATTATTTGGAGAAAACCAGTTTTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACACCTTCAATTCGCTCTTGGATTGATCCATCACTTACAGCCACTGATCATCAACAGCATCAACAAATGCCACCATCAATCCACCAATCTTCCTATCCAGGTTTAGGATTCGCCTCCGGCGGGTTCTACGGCTTTCACTTTCCAACGCGAATTCAGGGTGAGGAGGAGCACGATGGCATTTCAGACAAGCCATCCTCTCAGCACCAGCAGTCAAGCCACCAAATGGTTCTTAAGAGGGCAGAATTTTGGGACCAAACCGAGCCTGTTTGTGATGGTGGATGCTTTCTTGTTCTAAAAGCGAGAGGAATAGTAGGTATCTTTTACCTGGTTGGAGGAGCTAAGCTGTTGTCTAGATTGGATAAGCTAATTGCGATTTCCTTGCAAGTATGA 1944 49.49 MPLNLSIQTSYIVSIIPQLDHLFSCIKKTQPILKLEEEKQNSPSLDPPQGNRHHHHHHNQIPNSRHVEGKEEEENQDSPLHHRQDYHQDPNQQSHPFNVHQNQHLFLQTAHQDHQNLHNYYAALDSQPQQQQHQQQQTPKKRSYFQLPPHPVAVPTASASTFADQSIEYARKMGENHRQTATSSRLGMRAAGGGGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPAWSPTTVNASTQRQEQQSLNGENENLLFNSTGNRRDSRVSEFPLQNLQHTQMGEGPNNSTSSFLPPSLDSDAIADTIKSFFPIGTAASAAETTSSSIQFQNYPLDLLSRTSSQNQDLRLSLQSFQDPIAIHRHHHAQHQSQSHQNEHVLFSGTAALSGFDVTTAGWSEHNNLNPAEISRFPRITSWNPSGAETGGGHGGAGIRNTGYVFNSPNLPTALPPSPLVQPLFGENQFFSQRGPLQSSNTPSIRSWIDPSLTATDHQQHQQMPPSIHQSSYPGLGFASGGFYGFHFPTRIQGEEEHDGISDKPSSQHQQSSHQMVLKRAEFWDQTEPVCDGGCFLVLKARGIVGIFYLVGGAKLLSRLDKLIAISLQV 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30357394 30362132 + Sed0019524.1 Sed04g1559 710162

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1559 647 MobiDBLite consensus disorder prediction 178 197 - -
Sed04g1559 647 MobiDBLite consensus disorder prediction 280 311 - -
Sed04g1559 647 MobiDBLite consensus disorder prediction 62 89 - -
Sed04g1559 647 Pfam TCP family transcription factor 211 297 IPR017887 -
Sed04g1559 647 ProSiteProfiles TCP domain profile. 212 270 IPR017887 -
Sed04g1559 647 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 187 538 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Sed04g1559 647 MobiDBLite consensus disorder prediction 37 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1559 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0139 Sed-Chr1:1203876 Sed04g1559 Sed-Chr4:30357394 1.20E-34 dispersed
Sed04g1559 Sed-Chr4:30357394 Sed05g3209 Sed-Chr5:41826115 3.70E-31 dispersed
Sed04g2449 Sed-Chr4:37734130 Sed04g1559 Sed-Chr4:30357394 6.10E-115 transposed
Sed05g1931 Sed-Chr5:32682141 Sed04g1559 Sed-Chr4:30357394 3.60E-25 transposed
Sed13g0592 Sed-Chr13:4119444 Sed04g1559 Sed-Chr4:30357394 1.50E-149 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g2387 . 25 228 TCP Transcription Factor Family AT5G23280 63.8 1.1e-60 231.1
Sed04g2781 . 38 242 TCP Transcription Factor Family AT5G23280 58.0 1.4e-55 214.2
Sed03g0942 . 56 255 TCP Transcription Factor Family AT5G23280 59.0 4.1e-55 212.6
Sed04g2197 . 21 318 TCP Transcription Factor Family AT2G45680 52.3 1.4e-69 261.2
Sed06g1538 . 56 171 TCP Transcription Factor Family AT3G47620 78.8 1.7e-41 168.3
Sed08g2057 . 39 140 TCP Transcription Factor Family AT3G47620 81.4 1.1e-38 159.1
Sed08g1502 . 48 300 TCP Transcription Factor Family AT3G27010 55.4 4.5e-59 226.1
Sed06g0434 . 8 269 TCP Transcription Factor Family AT3G27010 53.9 6.5e-58 222.2
Sed07g2387 . 1 227 TCP Transcription Factor Family AT5G08330 58.4 1.2e-56 217.6
Sed03g0942 . 36 261 TCP Transcription Factor Family AT5G08330 58.3 1.6e-56 217.2
Sed04g2781 . 25 239 TCP Transcription Factor Family AT5G08330 56.1 5.1e-55 212.2
Sed13g0592 . 31 378 TCP Transcription Factor Family AT1G53230 52.9 3.6e-82 303.1
Sed06g0853 . 45 205 TCP Transcription Factor Family AT3G02150 54.5 1.1e-37 155.2
Sed06g0854 . 43 203 TCP Transcription Factor Family AT3G02150 54.5 1.1e-37 155.2
Sed06g1441 . 44 153 TCP Transcription Factor Family AT3G02150 70.2 2.5e-37 154.1
Sed04g1559 . 190 399 TCP Transcription Factor Family AT2G31070 50.5 3.7e-41 166.8
Sed13g0592 . 30 215 TCP Transcription Factor Family AT2G31070 53.9 4.1e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001202 4 3 4 3 3 1 4 2 1 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 2 2 2 3 3 1 75
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38163 PF03634 TCP 2.00E-30 No_clan Sed TF