Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1559 ATGCCTCTAAACCTCTCTATCCAAACATCCTACATAGTTTCAATCATACCTCAATTGGATCACTTGTTTTCCTGTATAAAAAAAACACAGCCCATTTTAAAGCTGGAAGAAGAAAAGCAAAACAGTCCGAGTCTGGATCCTCCTCAAGGAAATCGCCATCATCATCATCACCACAACCAGATTCCAAATTCAAGACATGTAGAAGGAAAAGAAGAGGAAGAAAACCAAGATTCTCCACTCCACCACCGCCAAGACTACCACCAAGACCCTAACCAGCAATCACATCCCTTCAATGTGCACCAGAATCAGCATCTTTTTCTTCAAACCGCCCATCAAGACCACCAAAATCTACACAATTACTACGCAGCTTTAGATTCACAGCCACAACAGCAACAGCATCAACAGCAACAAACCCCTAAGAAACGCTCTTACTTTCAGCTTCCACCTCATCCAGTGGCGGTACCTACCGCCTCTGCCTCCACTTTCGCCGACCAGAGCATCGAATATGCGAGAAAAATGGGAGAGAATCACCGCCAAACAGCAACGTCGTCAAGGCTGGGGATGAGAGCCGCCGGCGGCGGCGGCGGCGAGATCGTGGAGGTTCAAGGAGGCCACATTGTTCGTTCCACTGGAAGAAAAGATCGTCACAGCAAAGTTTGCACCGCCAAAGGCCCAAGAGACCGCCGGGTTCGCCTCTCTGCCCATACCGCCATCCAGTTCTACGACGTTCAAGACCGCCTCGGCTACGACCGACCCAGTAAAGCTGTAGACTGGCTTATCAAAAAGGCCAAGGCCGCCATTGACGAGCTCGCCGAGCTCCCTGCATGGAGTCCGACCACAGTAAACGCATCCACACAAAGACAGGAGCAGCAGAGTCTAAACGGCGAGAACGAGAATCTACTCTTCAATTCAACCGGTAATCGGAGAGATAGCAGAGTTTCTGAGTTTCCTCTGCAAAATTTGCAGCATACCCAAATGGGGGAAGGCCCAAATAACAGCACTTCTAGCTTTCTCCCACCGTCGTTAGACTCGGACGCTATTGCTGATACCATCAAGTCCTTCTTCCCTATAGGCACGGCGGCCTCGGCGGCGGAGACGACTTCATCGTCCATTCAGTTCCAGAATTACCCACTAGATTTGCTTTCCAGGACGAGTAGCCAGAATCAAGATCTGCGGCTTTCTTTGCAGTCGTTTCAAGACCCAATTGCTATTCACCGGCATCATCATGCTCAGCACCAGAGTCAAAGTCATCAGAATGAGCACGTCCTATTTTCCGGCACCGCCGCGTTAAGCGGGTTTGATGTGACCACCGCTGGTTGGTCTGAGCACAACAACCTCAATCCGGCGGAGATTAGCCGGTTTCCAAGGATAACTTCTTGGAATCCATCTGGTGCAGAAACTGGCGGTGGCCATGGTGGAGCTGGGATTAGGAATACGGGATATGTCTTCAACTCGCCTAACTTGCCAACTGCACTGCCACCTTCGCCACTTGTGCAACCATTATTTGGAGAAAACCAGTTTTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACACCTTCAATTCGCTCTTGGATTGATCCATCACTTACAGCCACTGATCATCAACAGCATCAACAAATGCCACCATCAATCCACCAATCTTCCTATCCAGGTTTAGGATTCGCCTCCGGCGGGTTCTACGGCTTTCACTTTCCAACGCGAATTCAGGGTGAGGAGGAGCACGATGGCATTTCAGACAAGCCATCCTCTCAGCACCAGCAGTCAAGCCACCAAATGGTTCTTAAGAGGGCAGAATTTTGGGACCAAACCGAGCCTGTTTGTGATGGTGGATGCTTTCTTGTTCTAAAAGCGAGAGGAATAGTAGGTATCTTTTACCTGGTTGGAGGAGCTAAGCTGTTGTCTAGATTGGATAAGCTAATTGCGATTTCCTTGCAAGTATGA 1944 49.49 MPLNLSIQTSYIVSIIPQLDHLFSCIKKTQPILKLEEEKQNSPSLDPPQGNRHHHHHHNQIPNSRHVEGKEEEENQDSPLHHRQDYHQDPNQQSHPFNVHQNQHLFLQTAHQDHQNLHNYYAALDSQPQQQQHQQQQTPKKRSYFQLPPHPVAVPTASASTFADQSIEYARKMGENHRQTATSSRLGMRAAGGGGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPAWSPTTVNASTQRQEQQSLNGENENLLFNSTGNRRDSRVSEFPLQNLQHTQMGEGPNNSTSSFLPPSLDSDAIADTIKSFFPIGTAASAAETTSSSIQFQNYPLDLLSRTSSQNQDLRLSLQSFQDPIAIHRHHHAQHQSQSHQNEHVLFSGTAALSGFDVTTAGWSEHNNLNPAEISRFPRITSWNPSGAETGGGHGGAGIRNTGYVFNSPNLPTALPPSPLVQPLFGENQFFSQRGPLQSSNTPSIRSWIDPSLTATDHQQHQQMPPSIHQSSYPGLGFASGGFYGFHFPTRIQGEEEHDGISDKPSSQHQQSSHQMVLKRAEFWDQTEPVCDGGCFLVLKARGIVGIFYLVGGAKLLSRLDKLIAISLQV 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30357394 30362132 + Sed0019524.1 Sed04g1559 710162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1559 647 MobiDBLite consensus disorder prediction 178 197 - -
Sed04g1559 647 MobiDBLite consensus disorder prediction 280 311 - -
Sed04g1559 647 MobiDBLite consensus disorder prediction 62 89 - -
Sed04g1559 647 Pfam TCP family transcription factor 211 297 IPR017887 -
Sed04g1559 647 ProSiteProfiles TCP domain profile. 212 270 IPR017887 -
Sed04g1559 647 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 187 538 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Sed04g1559 647 MobiDBLite consensus disorder prediction 37 97 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0139 Sed-Chr1:1203876 Sed04g1559 Sed-Chr4:30357394 1.20E-34 dispersed
Sed04g1559 Sed-Chr4:30357394 Sed05g3209 Sed-Chr5:41826115 3.70E-31 dispersed
Sed04g2449 Sed-Chr4:37734130 Sed04g1559 Sed-Chr4:30357394 6.10E-115 transposed
Sed05g1931 Sed-Chr5:32682141 Sed04g1559 Sed-Chr4:30357394 3.60E-25 transposed
Sed13g0592 Sed-Chr13:4119444 Sed04g1559 Sed-Chr4:30357394 1.50E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38163 PF03634 TCP 2.00E-30 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1559 - - - 0.0