Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1587 ATGGGTTGCGTTTGTTGTAAGCCCTCTGCTATTGAAGATAGCAAGGAAAGTCCAAGGGAGAGGTTGCCAAGTAAGACCTCGTCTGACCTCCGGGTGGCAAGATTGACTTCCTCGTCGGGGGATGATGCTTATCGGTCCAAGGATCAGCATGATGGTAATGATGCAAGAGTGTTGTTGATTGATAAGCAGGTGAATGGGTCGGGTCGACTGCAGGGTGAGAATATTGAGAGGAAGAGGGAGAAGATGGAGCATATGGCTGCTCAACATCATCCTTCAACGGGGAGAATTCCGAAGGCGGCAGAGGGAGACCACATTGCTGCAGGATGGCCGCCGTGGCTGGCTGCAGTTGCTGGAGAGGCCATCAAAGGATGGTTACCCCGACGAGCTGATTCTTTTGAGAAATTGGATAAAATTGGCCAAGGGACTTATAGTAATGTATATAGGGCTCGTGACCTTGACCAAAAGAAAATTGTTGCATTGAAGAAAGTAAGGTTTGACAACCTGGAACCTGAGAGTGTTCGCTTCATGGCTAGGGAAATTCACATATTACGTAGACTTGACCATCCAAATGTGATAAAGCTGGAGGGTCTAGTTACATCAAGGATGTCTTGCAGCCTCTATCTTGTTTTTGAGTACATGGAACATGACTTGGCAGGACTGGCTTCACATCCTGGTTTGAAGTTTACGGAGGCGCAGGTCAAATGTTACATGCAACAACTTTTGTGCGGACTTGATCACTGTCACAGTCATGGAGTTCTACATCGCGATATAAAGGGTTCCAACCTTTTAATTGACAATAATGGCATTTTGAAAATTGCAGACTTTGGTCTAGCAAGTGTTTTTGAGACCCACAAAAATCAGCCTCTGACAAGTCGGGTTGTAACTCTTTGGTATAGACCACCCGAGCTTTTACTTGGTGCCACTTATTATGGCACAGCAGTAGATTTGTGGAGTACTGGCTGCATACTTGCTGAATTGTATGCTGGGAAGCCCATTATGCCAGGAAGAACAGAGGTGGAACAACTACATAAAATATTTAAACTCTGCGGCTCTCCTTCAGAGGAATACTGGAGAAAATCAAGGTTGCCACATGCAACAATATTTAAGCCCCAACAGCCCTATAGACGCTGCGTTGCAGACACATTTAAGGATTTCCCTGCACCAGCGTTAGCTCTCATTGAGACACTACTCTCAGTAGATCCTGCCGATCGTGGCTCTGCTGCTCTTGCCCTTAAAAGCGAATTTTTTTCAACAAAGCCAGTACCTTGTGATCCTTCAAGTTTGCCGAAGTATCCTCCGAGCAAAGAACTCGATGCCAAGATAAGGGATGAGGAAGCTAGAAGACAAGGAGCAGTCGGAAGCAAAGGACGCCGACTTGACCTGCAAAGGAAAGATAGAGAGTCTCGAGCCGTTCCTGCACCTGATGCGAATGCCGAGTTAGCCTCATCAATGCTGAAACGACAATCCACTTCGAAGAGCCGGAGTGAGAAGTTCAACCCACATCCAGAAGAAGCTTCTGGCTTTCCAATTGATCCGCCTAGACCATCACAAGGAGCAGAAAGAATGGATTCTCAGGTGCGTCATCCTAAGAAAGCCTCCCATTCAGGTCCACTTGCTCAGCGAGCCGCTTGGGCAAAGGCTAGTAAGAATCCAGATGACGCTCCCACCGGAGCCGAGACTTTCACAACTTCAGGACTAGTAGCTGCTAGGAGAAGTATGCTGGCTGAAGATTGCAGGGACAAATCTGACTCTTCACAAGGAGAGGTTCAAAAACTAATTAGCAGGTTTCCTGGTTCCTTCAAAGAAACCTCGGAATCATCCACACTACCGGACCAGAAGTTCTCAAATCACAGTATTGTAGGCTCACACGACAAAGAGAGAAGCAGCAGCACCAAAGACCCTATAGTTGTTGGTTTTGGCTCAAAGGGTCATAAGATTCATTACTCTGGTCCATTACTGGTTCCTTCTGGCAACATGGACCAAATGTTGAAGGACCACGATCGCCATATCCAAGAAGCAGTAAGACGAGCTCGGCTTGATAAGGCTAAGGTACGAAAGGTTCAAGCTGATGGGAAACAGATGTTGACAAATTCATTATTCGTCTCGGGTCGATAA 2115 46.76 MGCVCCKPSAIEDSKESPRERLPSKTSSDLRVARLTSSSGDDAYRSKDQHDGNDARVLLIDKQVNGSGRLQGENIERKREKMEHMAAQHHPSTGRIPKAAEGDHIAAGWPPWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLCGLDHCHSHGVLHRDIKGSNLLIDNNGILKIADFGLASVFETHKNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWRKSRLPHATIFKPQQPYRRCVADTFKDFPAPALALIETLLSVDPADRGSAALALKSEFFSTKPVPCDPSSLPKYPPSKELDAKIRDEEARRQGAVGSKGRRLDLQRKDRESRAVPAPDANAELASSMLKRQSTSKSRSEKFNPHPEEASGFPIDPPRPSQGAERMDSQVRHPKKASHSGPLAQRAAWAKASKNPDDAPTGAETFTTSGLVAARRSMLAEDCRDKSDSSQGEVQKLISRFPGSFKETSESSTLPDQKFSNHSIVGSHDKERSSSTKDPIVVGFGSKGHKIHYSGPLLVPSGNMDQMLKDHDRHIQEAVRRARLDKAKVRKVQADGKQMLTNSLFVSGR 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30652697 30658720 - Sed0023762.1 Sed04g1587 710190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1587 704 MobiDBLite consensus disorder prediction 435 472 - -
Sed04g1587 704 MobiDBLite consensus disorder prediction 595 617 - -
Sed04g1587 704 CDD STKc_CDK9_like 132 416 - -
Sed04g1587 704 MobiDBLite consensus disorder prediction 420 564 - -
Sed04g1587 704 PANTHER CELL DIVISION PROTEIN KINASE 131 416 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Sed04g1587 704 FunFam probable serine/threonine-protein kinase At1g54610 215 456 - -
Sed04g1587 704 SMART serkin_6 132 416 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1587 704 Pfam Protein kinase domain 132 416 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1587 704 FunFam probable serine/threonine-protein kinase At1g54610 119 214 - -
Sed04g1587 704 SUPERFAMILY Protein kinase-like (PK-like) 126 424 IPR011009 -
Sed04g1587 704 MobiDBLite consensus disorder prediction 595 633 - -
Sed04g1587 704 ProSitePatterns Protein kinases ATP-binding region signature. 138 161 IPR017441 GO:0005524(InterPro)
Sed04g1587 704 MobiDBLite consensus disorder prediction 12 27 - -
Sed04g1587 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1587 704 MobiDBLite consensus disorder prediction 1 52 - -
Sed04g1587 704 Gene3D Phosphorylase Kinase; domain 1 119 214 - -
Sed04g1587 704 ProSiteProfiles Protein kinase domain profile. 132 416 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1587 704 Gene3D Transferase(Phosphotransferase) domain 1 215 455 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0602 Sed-Chr3:3642509 Sed04g1587 Sed-Chr4:30652697 4.70E-98 dispersed
Sed04g1587 Sed-Chr4:30652697 Sed05g3160 Sed-Chr5:41569146 1.40E-193 dispersed
Sed02g0027 Sed-Chr2:4187800 Sed04g1587 Sed-Chr4:30652697 5.60E-192 transposed
Sed10g1594 Sed-Chr10:32478506 Sed04g1587 Sed-Chr4:30652697 3.90E-174 transposed
Sed13g0562 Sed-Chr13:3905877 Sed04g1587 Sed-Chr4:30652697 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79006 PF00069 Pkinase 9.50E-69 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1587 - - - 0.0