Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1592 ATGGAGAATCACTCTTTTCCCCTTTTCCAAAGAACCCCATCTTTGTTTTTGGATCAAAACCCTCATAATAATGTTATGCTTTTTCTCTTAATCTTCTCATTTCTTGCCTGTTTCTTCTCACCCTCCTATGGGTATGATTCCTTGGACCCTTTTGCCAACATTACTGTCACTTGGGATTTCCTTGTGGAGAATGGGGATACTTATGATGTGAGGGTTTCATTATACAATTTCCAACTGTTCCGCCACGTGGAGCCGCCTGGTTGGAGACTTGGCTGGTCATGGAAGGGTGATGAAGTTATATGGGGTATGTGGGGGGCAGAGGCTACACAGCTAGGAAATTGCTCCAAATACATAGGCAAAGAATTTCCCCATTGTTGTGACAAGAAGCCTGAGATTGTTGATCTTATGCCTGGAGCTCCTTATAAGTTGCAGGTGGCTAATTGTTGCAAGGGAGGTGTGCTATCTTCTATGAGACAAGACCCTGCCAATTATGGGGCTACTTTCCAGATGAATGTTGGGAAGTCTGCTGGAAATGGTGTTGATAACAAAATGCCTGCAAATTTCTCTCTGGGGCTTCCTGGATATACTTGTAGTGACCCGGTTCATGTCTCTCCGACCAAGTTCAGTAAGGATGGCGGTCGCCGGTGGACACAAGTTCTAGACACATGGAACGTGACCTGCGTTTACTCGCAATTTCGATCATCACCGGCGCCAAGGTGCTGTGTTTCGTTGTCGTCCTTCTACAACAGCACCATTGTTCCTTGCCCTCACTGCAGCTGTGGTTGCCAAGGGCTAGAGGGAACAAAATGTGTCAAGTCAGGTGAAACTCCTTCAGTTTTGCAACTGCCACATGAACATTACTCTGGTGAAGTAAAACCATTGGTGAGGTGTTCAGAGCACATGTGCCCAATAAGGGTGCATTGGCATGTGAAACAGAGCTATACACAGTATTGGAGGGTAAAGATAACAATCACAAATCTAAATTTTGCTAAGAACTACTCTCAATGGAACTTGGTAGTTTTGCATCCCAACTTGAGGAATATTACTCAAATTTTCAGCTTCAACTACAGCCCCCTCAATCAGTATGGTAACATCAATGACACAGGGTTATTTTGGGGAATACACTTCTACAATGACTTGTTACTCACATCAGGGGAAAGAGGGAATGCTCAAACAGAGATGCTTCTCCAAAAAGATTCAGAAATATTTACTTTCAGAGAAGGATGGGCATTCCCAAGAAGAATTTTGTTCAATGGGGATGAATGTGTAATGCCACCTCCAGACCAATATCCAAGGCTCCCAAATAAAGCTCACAGGACCATGGCAGCAGCAGCCTCATGCATAGTCTTCTTATTGTTTCTCGCTGCATCATTATAA 1377 44.08 MENHSFPLFQRTPSLFLDQNPHNNVMLFLLIFSFLACFFSPSYGYDSLDPFANITVTWDFLVENGDTYDVRVSLYNFQLFRHVEPPGWRLGWSWKGDEVIWGMWGAEATQLGNCSKYIGKEFPHCCDKKPEIVDLMPGAPYKLQVANCCKGGVLSSMRQDPANYGATFQMNVGKSAGNGVDNKMPANFSLGLPGYTCSDPVHVSPTKFSKDGGRRWTQVLDTWNVTCVYSQFRSSPAPRCCVSLSSFYNSTIVPCPHCSCGCQGLEGTKCVKSGETPSVLQLPHEHYSGEVKPLVRCSEHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNYSQWNLVVLHPNLRNITQIFSFNYSPLNQYGNINDTGLFWGIHFYNDLLLTSGERGNAQTEMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNKAHRTMAAAASCIVFLLFLAASL 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30689915 30694411 + Sed0018378.1 Sed04g1592 710195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1592 458 PIRSF COBRA 20 458 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Sed04g1592 458 PANTHER PROTEIN COBRA 31 453 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Sed04g1592 458 Pfam COBRA-like protein 68 230 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1592 Sed-Chr4:30689915 Sed12g2020 Sed-Chr12:31062518 1.60E-137 dispersed
Sed04g1592 Sed-Chr4:30689915 Sed08g0288 Sed-Chr8:1707122 4.60E-137 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1592 - - - 0.0