Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1594 ATGGCGGGCAAAGGGCCATTTTCTTTTCGCCGGAGCAGTAGTCGCCGCCGCCCTAAGAAGGTGGTTCAATCATCACCCTTGTCATCTCCTCAGCCAACTCCGCGGATTGGAGCCAGTTCTCCTCCAACTAACAGCAATGGCAGCAGCGGTGCTCCGGTGGGAAAGGTGAAGAAGAAGGCTGGAGGAGCGAGGCTGTGGATGCGTCTCGACAGGTGGGGGCAGTCGGAGGTCTTAGAGTGGGACAAGAACGCCATAATTCGCCGTGCTGCAATTCCAGCTAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCCCACTCCTCTAACATACTCGCCAGGGAAAAGGCCATGGTTGTTAATTTAGAGTTCATAAAAGCTATAGTTACCGCTGAAGAAGTGCTGCTGCTTGACCCTCTTCGCCAAGAGGTGATTCCATTCGTGGAACAGCTAAGGAAGCTACTTGCTAAGAATAGTTCATCTCAGGTCCATGGAGATGGAACTGTGGATGAACGTGAAAATGATGTGAATGTTTCAAGAGGAGGGAAGTGGTTGCCAGTTTCAGAAGCTGTTGAAGGTGAGCAGTATGAGCTCCCGTTTGAGTTTCAAGTTCTGGAAAGTGCCTTGGAGGTTGTGTGTTTGTACCTTGATTCCAGTGTGGCTGACCTTGAGAGAGATGCTTATCCAGTCCTGGATGAACTGGCTAGAAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGCTTGAAAAGTAATCTTACCCGTATTCTTGCACGTGTTCAGAAGGTGCGGGACGAGTTAGAACATTTATTAGATGATAACGAAGATATGGCCCAACTGTATTTGACAAGGAAATGGATGCAGAATCAACAAGCCGAAGCTTTGCTGGGAGGTCTGGCTTCCAACAGCACCACTGCCATTGTTCCTCATCTTCGCCGACTTAGTTCCGTCCGGAGTGGAAGTGTGGTGACCAGCAATCTTCTGGATTATAATGACGTAGAGGATCTGGAGATGTTGCTCGAAGCATATTTCATGCAGTTAGATGGAACTCGTAACAGAATATTATCGGTTAGGGAATACATCGATGACACCGAGGATTACGTTAATATTCAACTCGACAACCAAAGAAATGAACTCATTCAGTTTCAGTTGACACTGACCATTGCTTCATTTGCCATAGCCGTTGAAACCTTAATTGCCGGGTGGTTCGGCATGAACATCCATTGTACTTTGTACGATACAGAAGGGATATTTGAGTACTTGGTTGGAGGTACTACGGCAGGTTGTTTATTGATTTTCGTTCTTATTATCGGGTATGCAAGATGGAAGAAGCTTCTTGGTTCATGA 1341 46.98 MAGKGPFSFRRSSSRRRPKKVVQSSPLSSPQPTPRIGASSPPTNSNGSSGAPVGKVKKKAGGARLWMRLDRWGQSEVLEWDKNAIIRRAAIPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVEQLRKLLAKNSSSQVHGDGTVDERENDVNVSRGGKWLPVSEAVEGEQYELPFEFQVLESALEVVCLYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDELEHLLDDNEDMAQLYLTRKWMQNQQAEALLGGLASNSTTAIVPHLRRLSSVRSGSVVTSNLLDYNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIAGWFGMNIHCTLYDTEGIFEYLVGGTTAGCLLIFVLIIGYARWKKLLGS 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30704261 30711512 - Sed0019853.1 Sed04g1594 710197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1594 446 Gene3D - 54 137 - -
Sed04g1594 446 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 382 433 IPR045863 -
Sed04g1594 446 MobiDBLite consensus disorder prediction 19 51 - -
Sed04g1594 446 Gene3D Magnesium transport protein CorA, transmembrane region 384 444 - -
Sed04g1594 446 FunFam Magnesium transporter MRS2-1 54 137 - -
Sed04g1594 446 CDD Mrs2_Mfm1p-like 66 443 IPR039204 -
Sed04g1594 446 MobiDBLite consensus disorder prediction 1 57 - -
Sed04g1594 446 Pfam Magnesium transporter MRS2-like 79 374 - -
Sed04g1594 446 Coils Coil 244 278 - -
Sed04g1594 446 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 45 443 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Sed04g1594 446 Gene3D Magnesium transport protein CorA, transmembrane region 142 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1594 Sed-Chr4:30704261 Sed13g0549 Sed-Chr13:3768900 1.60E-163 dispersed
Sed13g0547 Sed-Chr13:3768900 Sed04g1594 Sed-Chr4:30704261 6.80E-194 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1594 K16075 - csv:101203496 680.633