Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1596 ATGGCTTCTCGTTTCTGGACCCAGGGTGGTGGCAGTGGTAGTGATTCTGAGCCGGAGCAGAGTGATTATGATGAGGAAATTGACGATCTACAGGCTGATAGTAAACCCCAACAAGGTGGAAGCAGATATCTTCAAGAGAATGACAGTGACAGTGACGATTCTGATAAAGATAAACGTATTGTCCGGTCGGCGAAAGATAAGCGTTTTGATGAGATGTCTGCAACTGTGGATCAGATGAAAAATGCGATGAAGATCAATGACTGGGTAAGCCTTCAGGAGAGTTTTGATAAGATAAATAAGCAGCTTGAGAAAGTCATGCGTGTTACTGAGTCTGAGAAGGTGCCAACTCTTTATATTAAAGCACTTGTGATGTTAGAGGACTTTTTAAATCAAGCCATGGCTAATAAGGAAGCTAAGAAGAAAATGAGTACTAGCAATGCCAAGGCTTTGAATTCAATGAAACAAAAGCTGAAGAAGAACAATAAGCAATATGAAGAGTTGATTACCAAGTGTAGGGAGAATCCTGAGGTTGAGGAAGAAAAGGATGATGAGTTGGAGTCGGAGATGGAAGATGATGATGATGATTCTGTAATTGAGGAGGATCCTACGAAAATCGAGTCAGGATCAGAAGATGAAGAGGACGAAGAAGAAGAAGACCAAGAGGATGGTCCTTGGACAAAACAGTTGAGCAAAAAAGATAAGCTCATGGATAAGCAGTTCATGAAGGATCCAAGTGAGATCACATGGGACACTGTTAACAAGAAGTTTAAGGAGGTTGTGGCTGCTCGGGGTAGGAAGGGGACTGGAAGATTTGAGCAGGTTGAGCAGCTCACATTCTTAACAAAAGTTGCTAAGACCCCTGCACAGAAGCTTGAGATCTTGTTCAGCGTTATATCTGCTCAGTTTGATGTTAATCCGGGGCTTAGTGGGCACATGCCTATCACTGTGTGGAAGAAGTGTGTACAAAATATGCTTTCTATAATTGACATTCTTATGCAGAATTCTAACATTGTGGTTGATGATATGGTCGAACCTGATGAGAACGAGAGCCAGAAGCCAGCGGACCATAAGGGCACAATTCGTGTTTGGGGGAACTTGGTTGCTTTTGTTGAGAGAATCGACACCGAATTTTTTAAGAGTTTGCAGTGTATTGATCCACATACACGTGACTATGTTGAAAGACTCAGAGATGAGCCAATGTTTATGGTTCTTGCTCAGAATGTCCAAGAATATTTGGAACGAACTGGGGATTACAAAGCAGCTTCAAAAGTTGCCTTAAGGCGTGTTGAGCTAATCTATTACAAACCACAAGAGGTTTATGATGCCATGAGAAAGCTTGCAGAGCTATCAGCGGATGGAGATAGTGGAGAAGCAAGTGAGGAGGCTAAAGTCGTGGAAGAGAGTAGGGGACCCACTGCATTTATTGTCACACCGGAGGTTGTACCTCGTAAGCCCACATTTCCAGAGAGTAGTAGAGCTTTTATGGACATTCTGGTGACCCTTATATACCAGTATGGAGATGAGCGAACAAAAGCACGAGCTATGCTCTGCGATATTTACCAACACGCTCTCTTGGATGAATTTTATATTTCTAGTGACTTGCTTCGGATGAGTCACTTGCAAGATAGTATTCAACACTTGGACATTTCAACACAGATCCTTTTCAATAGGGCAATGGCTCAACTTGGTCTATGTGGAGTTCGGGTTGGCCTGATTAGTGAAGGACATGGCTGCCTTTCAGAATTATATGCTGGTGGGAGGGTGAAGGAATTGCTTGCACAAGGTGTCTCACAAAGTCGATACCATGAAAAGACTCCAGAACAGGAAAGGCTTGAAAGAAGAAGGCAGATGCCATACCACATGCACATAAATCTTGAACTCCTGGAGGCTGTGCATTTAATATGTGCTATGCTGCTGGAAATTCCCAACATGGCAGGCAACGTTCATGATGCAAAGCGCAAGGTTATTAGCAAGAACTTTAGAAGGTTACTTGAGGTGAGTGAGAGACAAACCTTCACCGGTCCTCCTGAGAATGTCAGAGATCATGTAATGGCTGCTACCAGAGCCCTTCGCAAGGGCGATTTCCAGAAGGCTTTTGATGTCATTGCATCTCTAGATGTATGGAAGCTTCTTAGAAATCGTGATGGAGTGCTGGAAATGCTTAAAGGAAAGATCAAGGAGGAGGCTCTGAGGACTTACCTTCTCACATTCTCTTCCTCATATGATTCTCTGAGCTTGGACCATCTAACTCGAATGTTCGATCTCACAGAGGGTCAAACACACAGTATTGTTAGCAAGATGATGATCAATGAGGAGCTCCATGCAAGTTGGGATCAGCCAAGTGGGTGTGTCATCTTCCACGACGTTACACTCACCCGGTTACAGGGCCTGGCATTCCATTTGGCTGATAAGCTGTCAATCTTTGCTGAAACTAATGAGAGGGCAGCTGAAGCAAGAATTGGAGGATTAGATTTACCAATGAGACGAAGAGACAACCAGGAATATGCTTCTGGAGCTGTTGGTGGGGGTAGTAGCAGGTGGCCAGACAACATGTCTTATAATCAAGGAAGGCAAGGTGGTGGTAATTCGCGTGCAGGATATAGCAGTGGAGGCCGAGGCCAAGCCCAAGGTGGGGGTGGTGGATATTCTAGAGATCGGATGGGTCAGTCACGAGGAGGCAATGCAGGATATCAAAGCATGCGTTATCAAGATGCGGCATATGGATCGGGGAGGACTGCTTATCAGTCGGGTTCTGTCCGAGGGTCCCAGATGGATGCTTCAGCTCGCATGGTCAGTCTCAACAAAGGTGTTCGCGCCTAG 2820 44.75 MASRFWTQGGGSGSDSEPEQSDYDEEIDDLQADSKPQQGGSRYLQENDSDSDDSDKDKRIVRSAKDKRFDEMSATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPTLYIKALVMLEDFLNQAMANKEAKKKMSTSNAKALNSMKQKLKKNNKQYEELITKCRENPEVEEEKDDELESEMEDDDDDSVIEEDPTKIESGSEDEEDEEEEDQEDGPWTKQLSKKDKLMDKQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVISAQFDVNPGLSGHMPITVWKKCVQNMLSIIDILMQNSNIVVDDMVEPDENESQKPADHKGTIRVWGNLVAFVERIDTEFFKSLQCIDPHTRDYVERLRDEPMFMVLAQNVQEYLERTGDYKAASKVALRRVELIYYKPQEVYDAMRKLAELSADGDSGEASEEAKVVEESRGPTAFIVTPEVVPRKPTFPESSRAFMDILVTLIYQYGDERTKARAMLCDIYQHALLDEFYISSDLLRMSHLQDSIQHLDISTQILFNRAMAQLGLCGVRVGLISEGHGCLSELYAGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEIPNMAGNVHDAKRKVISKNFRRLLEVSERQTFTGPPENVRDHVMAATRALRKGDFQKAFDVIASLDVWKLLRNRDGVLEMLKGKIKEEALRTYLLTFSSSYDSLSLDHLTRMFDLTEGQTHSIVSKMMINEELHASWDQPSGCVIFHDVTLTRLQGLAFHLADKLSIFAETNERAAEARIGGLDLPMRRRDNQEYASGAVGGGSSRWPDNMSYNQGRQGGGNSRAGYSSGGRGQAQGGGGGYSRDRMGQSRGGNAGYQSMRYQDAAYGSGRTAYQSGSVRGSQMDASARMVSLNKGVRA 939
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30729433 30733666 - Sed0009427.1 Sed04g1596 710199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1596 939 ProSiteProfiles PCI domain profile. 619 791 IPR000717 -
Sed04g1596 939 MobiDBLite consensus disorder prediction 847 870 - -
Sed04g1596 939 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 720 808 IPR000717 -
Sed04g1596 939 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 46 651 IPR008905 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Sed04g1596 939 MobiDBLite consensus disorder prediction 178 222 - -
Sed04g1596 939 MobiDBLite consensus disorder prediction 1 66 - -
Sed04g1596 939 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 889 IPR027516 GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005852(PANTHER)|GO:0005852(InterPro)|GO:0006413(PANTHER)|GO:0006413(InterPro)|GO:0031369(InterPro)|GO:0031369(PANTHER)
Sed04g1596 939 Pfam PCI domain 717 788 IPR000717 -
Sed04g1596 939 SUPERFAMILY Winged helix DNA-binding domain 717 789 IPR036390 -
Sed04g1596 939 MobiDBLite consensus disorder prediction 1 17 - -
Sed04g1596 939 MobiDBLite consensus disorder prediction 168 232 - -
Sed04g1596 939 MobiDBLite consensus disorder prediction 835 896 - -
Sed04g1596 939 Coils Coil 147 174 - -
Sed04g1596 939 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 866 IPR027516 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Sed04g1596 939 MobiDBLite consensus disorder prediction 46 66 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0544 Sed-Chr13:3756545 Sed04g1596 Sed-Chr4:30729433 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1596 K03252 - csv:101203990 1529.23