Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1605 ATGGAAATGAATCCCCTCGACGGGCACGGGACGACCGAGAAAGATGGGAGTGACAAGAAAAAGGAGGAGAAGCCCGGGAGCGAGGAGGAGGACGACAGCGGCAGCGACAGCGACATGCCGTCGTCGTTGAGCCTTAGAGAGCTTTCTAAGGTTATACTTCCACCCTTGGGAGTTTCAAGCTTTACTGAAGCTAGTAAAGTCAAGGCCCATAGATGGATCATTTCTCCTATGAGCTCAAGATACAGATGGTGGCAGTCGTTCATGGTGGTTCTGGTTGCGTACGCGGCGTGGGTTTATCCAATGGAAGTGGCGTTCATGGATGCAATTCCCAAGCGAGATTTGCTGATTGCAGACACTGTTGTCGATTTCTTTTTCGCCATTGACATCTTCCTCACTTTCTTCGTTGCTTACATCGATCATCGCACTCAGCTCCTCGTTCGCGACTCTAAGAAGATAGCTCTCAGGTACTTGTCAACATGGTTCTTGATGGATTTGGCATCAACAATCCCATTTGAGACATTTGGATACCTTTTTACTGGCAAGTATAATGGTGGTCTCCTTTATGCCCTCCTGGGGTTGCTCAGATTTTGGCGACTGCGACGTGTCAAGCAATTTTTCACCAGGCTTGAAAAGGACATTAGATTCAGCTACTTTTGGGTTCGATGTACTAGGCTTCTATTCGTTACTGTGTTTTATGTCCATTGTGCTGGATGCCTCTACTACTTGTTGGCTGATCGATATCCGAATGAAGAACAGACTTGGATCGGATCTACTGTTCCAAATTTTAAAGAGTTGACTGTTGGAGTGAGATATGTTTCAGCCTTGTATTGGTCTATCACCACAATGACAACTGTTGGTTATGGTGATCTTCATGCTGTGAACACCGGAGAGAAGATCTTCATCATTTTCTACATGCTCTTAAATCTTGGGTTAACTGCTTACTTGATTGGTAACATGACAAACTTAGTCGTTGAAGGAACTCGTCGCACGATGGAATTTAGAAACAGCATCGAAATGGCGTCGAATTTTGTTAACCGTAACCGTCTGCCTTCAAGGTTGAAAGAACATATATTGGCATATATGTGTTTGAGATTCAAGGCCGAGAGCCTGAACCAACAACATCTAATCGAAGAGCTTCCAAAGTCGATTTGCAAAAGCATATGCCAGCGATTATTTTTGCCAACTGTGGAGAAACTCTACCTCTTCAAGGGTGTCTCGAAGGAAACACTTGCGCTTCTGGTTGCAAATATGAAAGCTGAGTATATACCTCCTAAGGAGGACGTGGTAATACATAATGAAACCCCGGATGAAATTTATATCATTGTATCTGGGGAAATCGAAATTATTGACTACGAAATGGAGGTGGAGCGGATTGTTGGTACATTACATTGTGGCAGTATGTTTGGGGAAGTTGGAGCACTTTGTTGCAAAAACCAAACTTTTACATACAGAACAAGAACTCTTACACAGCTCTTGAGGCTAAAAACAAGTGTACTACAAGAAGCTATGCATGTCAGGCTAGAAGACAGTACGACCATCATCAAGAACTTCCTTCAGGAAAGGGAGCTCAGCCACAAAATCACCATAGAAGGTTCACCCGAAAAAGAAGTGCCGGTGTTGAGTGAAGAAAAGGATCAAAGTTTCAACTGGAAACACTCCAGTGAATTAGATTTTGCTAGAGTGAACATATATAAAGGTCATCCAGATGCCAGAAAACAGGCTTCTTGTGATGTTCCTGGAAAGCTCATCAGATTGCCACATTCAATGGAGGAACTCAAAAAAGTTGCAGGTGAAAAGTTTGGATTTGATGCAATAAATGTTGTTTTGACAAATGAAGAAGGCTCTGAAATTGATTCCATTGATGTGATAAGGGATAATGATAAGCTTTTTTTCATAGTTACAGATGATAAATTTCTGTAA 1920 42.66 MEMNPLDGHGTTEKDGSDKKKEEKPGSEEEDDSGSDSDMPSSLSLRELSKVILPPLGVSSFTEASKVKAHRWIISPMSSRYRWWQSFMVVLVAYAAWVYPMEVAFMDAIPKRDLLIADTVVDFFFAIDIFLTFFVAYIDHRTQLLVRDSKKIALRYLSTWFLMDLASTIPFETFGYLFTGKYNGGLLYALLGLLRFWRLRRVKQFFTRLEKDIRFSYFWVRCTRLLFVTVFYVHCAGCLYYLLADRYPNEEQTWIGSTVPNFKELTVGVRYVSALYWSITTMTTVGYGDLHAVNTGEKIFIIFYMLLNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEMASNFVNRNRLPSRLKEHILAYMCLRFKAESLNQQHLIEELPKSICKSICQRLFLPTVEKLYLFKGVSKETLALLVANMKAEYIPPKEDVVIHNETPDEIYIIVSGEIEIIDYEMEVERIVGTLHCGSMFGEVGALCCKNQTFTYRTRTLTQLLRLKTSVLQEAMHVRLEDSTTIIKNFLQERELSHKITIEGSPEKEVPVLSEEKDQSFNWKHSSELDFARVNIYKGHPDARKQASCDVPGKLIRLPHSMEELKKVAGEKFGFDAINVVLTNEEGSEIDSIDVIRDNDKLFFIVTDDKFL 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30794336 30802257 - Sed0008590.1 Sed04g1605 710208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1605 639 ProSiteProfiles KHA domain profile. 560 639 IPR021789 -
Sed04g1605 639 FunFam Potassium channel KAT3 83 325 - -
Sed04g1605 639 SUPERFAMILY cAMP-binding domain-like 328 517 IPR018490 -
Sed04g1605 639 PRINTS EAG/ELK/ERG potassium channel family signature 271 288 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed04g1605 639 PRINTS EAG/ELK/ERG potassium channel family signature 315 324 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed04g1605 639 PRINTS EAG/ELK/ERG potassium channel family signature 118 128 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed04g1605 639 PRINTS EAG/ELK/ERG potassium channel family signature 129 138 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed04g1605 639 PRINTS EAG/ELK/ERG potassium channel family signature 297 308 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed04g1605 639 MobiDBLite consensus disorder prediction 7 28 - -
Sed04g1605 639 Pfam Cyclic nucleotide-binding domain 424 503 IPR000595 -
Sed04g1605 639 FunFam Potassium channel KAT2 389 524 - -
Sed04g1605 639 MobiDBLite consensus disorder prediction 1 42 - -
Sed04g1605 639 Pfam KHA, dimerisation domain of potassium ion channel 560 631 IPR021789 -
Sed04g1605 639 Gene3D Jelly Rolls 368 537 IPR014710 -
Sed04g1605 639 SUPERFAMILY Voltage-gated potassium channels 76 324 - -
Sed04g1605 639 ProSiteProfiles cAMP/cGMP binding motif profile. 401 520 IPR000595 -
Sed04g1605 639 Gene3D - 83 324 - -
Sed04g1605 639 Pfam Ion transport protein 81 330 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g1605 639 PANTHER POTASSIUM CHANNEL AKT1 29 528 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Sed04g1605 639 CDD CAP_ED 401 504 IPR000595 -
Sed04g1605 639 SMART cnmp_10 401 518 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1605 Sed-Chr4:30794336 Sed12g2387 Sed-Chr12:33723683 1.70E-129 dispersed
Sed13g0533 Sed-Chr13:3669303 Sed04g1605 Sed-Chr4:30794336 4.00E-301 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1605 K21867 - csv:101205212 1021.15