Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g1605 | ATGGAAATGAATCCCCTCGACGGGCACGGGACGACCGAGAAAGATGGGAGTGACAAGAAAAAGGAGGAGAAGCCCGGGAGCGAGGAGGAGGACGACAGCGGCAGCGACAGCGACATGCCGTCGTCGTTGAGCCTTAGAGAGCTTTCTAAGGTTATACTTCCACCCTTGGGAGTTTCAAGCTTTACTGAAGCTAGTAAAGTCAAGGCCCATAGATGGATCATTTCTCCTATGAGCTCAAGATACAGATGGTGGCAGTCGTTCATGGTGGTTCTGGTTGCGTACGCGGCGTGGGTTTATCCAATGGAAGTGGCGTTCATGGATGCAATTCCCAAGCGAGATTTGCTGATTGCAGACACTGTTGTCGATTTCTTTTTCGCCATTGACATCTTCCTCACTTTCTTCGTTGCTTACATCGATCATCGCACTCAGCTCCTCGTTCGCGACTCTAAGAAGATAGCTCTCAGGTACTTGTCAACATGGTTCTTGATGGATTTGGCATCAACAATCCCATTTGAGACATTTGGATACCTTTTTACTGGCAAGTATAATGGTGGTCTCCTTTATGCCCTCCTGGGGTTGCTCAGATTTTGGCGACTGCGACGTGTCAAGCAATTTTTCACCAGGCTTGAAAAGGACATTAGATTCAGCTACTTTTGGGTTCGATGTACTAGGCTTCTATTCGTTACTGTGTTTTATGTCCATTGTGCTGGATGCCTCTACTACTTGTTGGCTGATCGATATCCGAATGAAGAACAGACTTGGATCGGATCTACTGTTCCAAATTTTAAAGAGTTGACTGTTGGAGTGAGATATGTTTCAGCCTTGTATTGGTCTATCACCACAATGACAACTGTTGGTTATGGTGATCTTCATGCTGTGAACACCGGAGAGAAGATCTTCATCATTTTCTACATGCTCTTAAATCTTGGGTTAACTGCTTACTTGATTGGTAACATGACAAACTTAGTCGTTGAAGGAACTCGTCGCACGATGGAATTTAGAAACAGCATCGAAATGGCGTCGAATTTTGTTAACCGTAACCGTCTGCCTTCAAGGTTGAAAGAACATATATTGGCATATATGTGTTTGAGATTCAAGGCCGAGAGCCTGAACCAACAACATCTAATCGAAGAGCTTCCAAAGTCGATTTGCAAAAGCATATGCCAGCGATTATTTTTGCCAACTGTGGAGAAACTCTACCTCTTCAAGGGTGTCTCGAAGGAAACACTTGCGCTTCTGGTTGCAAATATGAAAGCTGAGTATATACCTCCTAAGGAGGACGTGGTAATACATAATGAAACCCCGGATGAAATTTATATCATTGTATCTGGGGAAATCGAAATTATTGACTACGAAATGGAGGTGGAGCGGATTGTTGGTACATTACATTGTGGCAGTATGTTTGGGGAAGTTGGAGCACTTTGTTGCAAAAACCAAACTTTTACATACAGAACAAGAACTCTTACACAGCTCTTGAGGCTAAAAACAAGTGTACTACAAGAAGCTATGCATGTCAGGCTAGAAGACAGTACGACCATCATCAAGAACTTCCTTCAGGAAAGGGAGCTCAGCCACAAAATCACCATAGAAGGTTCACCCGAAAAAGAAGTGCCGGTGTTGAGTGAAGAAAAGGATCAAAGTTTCAACTGGAAACACTCCAGTGAATTAGATTTTGCTAGAGTGAACATATATAAAGGTCATCCAGATGCCAGAAAACAGGCTTCTTGTGATGTTCCTGGAAAGCTCATCAGATTGCCACATTCAATGGAGGAACTCAAAAAAGTTGCAGGTGAAAAGTTTGGATTTGATGCAATAAATGTTGTTTTGACAAATGAAGAAGGCTCTGAAATTGATTCCATTGATGTGATAAGGGATAATGATAAGCTTTTTTTCATAGTTACAGATGATAAATTTCTGTAA | 1920 | 42.66 | MEMNPLDGHGTTEKDGSDKKKEEKPGSEEEDDSGSDSDMPSSLSLRELSKVILPPLGVSSFTEASKVKAHRWIISPMSSRYRWWQSFMVVLVAYAAWVYPMEVAFMDAIPKRDLLIADTVVDFFFAIDIFLTFFVAYIDHRTQLLVRDSKKIALRYLSTWFLMDLASTIPFETFGYLFTGKYNGGLLYALLGLLRFWRLRRVKQFFTRLEKDIRFSYFWVRCTRLLFVTVFYVHCAGCLYYLLADRYPNEEQTWIGSTVPNFKELTVGVRYVSALYWSITTMTTVGYGDLHAVNTGEKIFIIFYMLLNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEMASNFVNRNRLPSRLKEHILAYMCLRFKAESLNQQHLIEELPKSICKSICQRLFLPTVEKLYLFKGVSKETLALLVANMKAEYIPPKEDVVIHNETPDEIYIIVSGEIEIIDYEMEVERIVGTLHCGSMFGEVGALCCKNQTFTYRTRTLTQLLRLKTSVLQEAMHVRLEDSTTIIKNFLQERELSHKITIEGSPEKEVPVLSEEKDQSFNWKHSSELDFARVNIYKGHPDARKQASCDVPGKLIRLPHSMEELKKVAGEKFGFDAINVVLTNEEGSEIDSIDVIRDNDKLFFIVTDDKFL | 639 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 30794336 | 30802257 | - | Sed0008590.1 | Sed04g1605 | 710208 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g1605 | 639 | ProSiteProfiles | KHA domain profile. | 560 | 639 | IPR021789 | - | |
Sed04g1605 | 639 | FunFam | Potassium channel KAT3 | 83 | 325 | - | - | |
Sed04g1605 | 639 | SUPERFAMILY | cAMP-binding domain-like | 328 | 517 | IPR018490 | - | |
Sed04g1605 | 639 | PRINTS | EAG/ELK/ERG potassium channel family signature | 271 | 288 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Sed04g1605 | 639 | PRINTS | EAG/ELK/ERG potassium channel family signature | 315 | 324 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Sed04g1605 | 639 | PRINTS | EAG/ELK/ERG potassium channel family signature | 118 | 128 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Sed04g1605 | 639 | PRINTS | EAG/ELK/ERG potassium channel family signature | 129 | 138 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Sed04g1605 | 639 | PRINTS | EAG/ELK/ERG potassium channel family signature | 297 | 308 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Sed04g1605 | 639 | MobiDBLite | consensus disorder prediction | 7 | 28 | - | - | |
Sed04g1605 | 639 | Pfam | Cyclic nucleotide-binding domain | 424 | 503 | IPR000595 | - | |
Sed04g1605 | 639 | FunFam | Potassium channel KAT2 | 389 | 524 | - | - | |
Sed04g1605 | 639 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Sed04g1605 | 639 | Pfam | KHA, dimerisation domain of potassium ion channel | 560 | 631 | IPR021789 | - | |
Sed04g1605 | 639 | Gene3D | Jelly Rolls | 368 | 537 | IPR014710 | - | |
Sed04g1605 | 639 | SUPERFAMILY | Voltage-gated potassium channels | 76 | 324 | - | - | |
Sed04g1605 | 639 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 401 | 520 | IPR000595 | - | |
Sed04g1605 | 639 | Gene3D | - | 83 | 324 | - | - | |
Sed04g1605 | 639 | Pfam | Ion transport protein | 81 | 330 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed04g1605 | 639 | PANTHER | POTASSIUM CHANNEL AKT1 | 29 | 528 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
Sed04g1605 | 639 | CDD | CAP_ED | 401 | 504 | IPR000595 | - | |
Sed04g1605 | 639 | SMART | cnmp_10 | 401 | 518 | IPR000595 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g1605 | Sed-Chr4:30794336 | Sed12g2387 | Sed-Chr12:33723683 | 1.70E-129 | dispersed | |
Sed13g0533 | Sed-Chr13:3669303 | Sed04g1605 | Sed-Chr4:30794336 | 4.00E-301 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g1605 | K21867 | - | csv:101205212 | 1021.15 |