Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1607 ATGAACAATTTCATTGCTTTCCTTCTCTGTTCACTCTCTGTAACTTCAGCCGCCACTGAAATCACCAACCCCATTTGTCCAATGGATCTCAACTACGTCCTCACAATCCCTTGGAATGCCACTGATTGCAGAAACCCTCATCTCTCACAAACCAAATCCAAATCCCCTTGTTGTCAAACCCTTTTGTCCTTGTATGGAATTGCTCTTGCCCAGCACCTCAAAGACACCTCTCTTTTCAACCTTCCAGACCTGCCCATTTCTCAATCTTGCCTTCAGGATTACCAATCGAAGCTCTCCTCGATTTCGCTTCCCAGCGACATTGTTTCCAATTGCTTTGATCCCTTGCAGTTTGTGATCTCTGATAATGTCTGTGCTGGTATTCAGAATACTGGCGATTGGGTTGCAAAGCTCGGCCGGGACTCACCGCTGGACTTCGGGTGCCGGGCGGAACTTGTTGGTCCGGGTTGTGATGCTTGTCTTGCTGCTGGTTTTAAAGTTCAGTCGATTTTGACAGGAATGGATGGTAATAAATCTCACTCTATGGATTGCTTTTACTTTGCTGTTCTTTATGCTGCTGGTGTTGTGAATGAGTTTGGCCCTCAGGGTCGTGGTGCGTTAGGTTGTATTTTTAATTTGCAATTGAGTTCTGAAATTGATTTGAAAAGTAAGCATTCTGCTCTTGTTTATGGCTTTACTGCTGTTGGAGTTTTGGTTGTTTTTGTTCTGTTGGGGATTTGGTTTTGGTATTACAAATGGAGGAAAATGGTTTTGAAGTCTGGTTTGGAGTTTGATGTGGAGCTGGATGAACAACAAGGGTCTAGGCCACATGCCAGGCCTAATACTGGATCAATTTGGTTTAAGATTCAGGAGCTAGAGAAGGCGACTGATAACTTTTCTTCGAAGAATTTCATCGGAAGAGGCGGGTTTGGTTTAGTTCACAAAGGGACATTACCTGATGGAAGTATGGTGGCAGTCAAGAAAGTGATTGAATCAGATTTTCAGGGCAATGCTGAGTTTTGTAATGAGGTTGAGATAATTAGTAATTTGAAGCACAGGAATCTTGTCCAACTTAGAGGATGTTGTGTGATTGATGGGGATGATGGTTATGGTGGGAGAGAAAGTGAGAGATACCTTGTTTATGATTACATGCCGAATGGAAATCTTGATGATCATTTGTTCCTTACTCCATTTGATCAAGTTGGAACTATGAAAAAATCATTGACATGGCCTCAAAGAAAGAATATTATTTTGGATGTGGCAAAAGGGTTAGCTTATCTGCACTATGGAGTGAAACCTTCCATCTATCACAGAGATATCAAGGCGACGAACATATTGCTAGATGCGGATATGAGAGCAAGAGTGGCTGATTTCGGGCTCGCCAAACAGAGCAGGGAAGGACAGTCTCATCTAACGACTCGAGTTGCAGGAACTCATGGGTATCTAGCCCCCGAATATGCGCTTTACGGACAACTAACTGAGAAGAGTGATGTTTATAGCTTTGGAGTAGTTGTTTTGGAGATAATGTGTGGGAGAAAAGCTCTTGATTTCTCCTTGTCGTCATCACCGCGCGCATTTCTGATAACAGATTGGGCTTGGTCCTTGGTGAAAGCTGGAAAATTAGGGGAAACTCTTAATCCTTCTCTACTGAAAGATGGAGGAGACTCTTCAATTTCAAATCCAAAAGCCATAATGGAGAGGTTTGTTGCAGTTGGAATTTTATGTTCTCATGTGATGGTGACTTTAAGGCCTACCATTATGGAAGCTCTGAAAATGTTGGAGGGTGACATTGAAGTTCCTCAAATTTCTGATCGGCCAGTGCCTTATGGTCATCCTTCATTTGTTGGCGACGGAAGCAATTTCAGTATATCACTGACACCGAGCGGGCCTCAACTGGTTAACGACCACATGCTCAGATGA 1917 43.19 MNNFIAFLLCSLSVTSAATEITNPICPMDLNYVLTIPWNATDCRNPHLSQTKSKSPCCQTLLSLYGIALAQHLKDTSLFNLPDLPISQSCLQDYQSKLSSISLPSDIVSNCFDPLQFVISDNVCAGIQNTGDWVAKLGRDSPLDFGCRAELVGPGCDACLAAGFKVQSILTGMDGNKSHSMDCFYFAVLYAAGVVNEFGPQGRGALGCIFNLQLSSEIDLKSKHSALVYGFTAVGVLVVFVLLGIWFWYYKWRKMVLKSGLEFDVELDEQQGSRPHARPNTGSIWFKIQELEKATDNFSSKNFIGRGGFGLVHKGTLPDGSMVAVKKVIESDFQGNAEFCNEVEIISNLKHRNLVQLRGCCVIDGDDGYGGRESERYLVYDYMPNGNLDDHLFLTPFDQVGTMKKSLTWPQRKNIILDVAKGLAYLHYGVKPSIYHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDFSLSSSPRAFLITDWAWSLVKAGKLGETLNPSLLKDGGDSSISNPKAIMERFVAVGILCSHVMVTLRPTIMEALKMLEGDIEVPQISDRPVPYGHPSFVGDGSNFSISLTPSGPQLVNDHMLR 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30858786 30861040 - Sed0005251.1 Sed04g1607 710210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1607 638 PANTHER OS01G0750732 PROTEIN 49 601 IPR050885 -
Sed04g1607 638 Pfam SPARK 24 184 IPR043891 -
Sed04g1607 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1607 638 FunFam Receptor-like serine/threonine-protein kinase At4g25390 265 382 - -
Sed04g1607 638 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 383 600 - -
Sed04g1607 638 Gene3D Transferase(Phosphotransferase) domain 1 383 602 - -
Sed04g1607 638 Pfam Protein kinase domain 300 515 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1607 638 ProSitePatterns Protein kinases ATP-binding region signature. 304 327 IPR017441 GO:0005524(InterPro)
Sed04g1607 638 Gene3D Phosphorylase Kinase; domain 1 264 382 - -
Sed04g1607 638 SMART serkin_6 298 592 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1607 638 SUPERFAMILY Protein kinase-like (PK-like) 275 593 IPR011009 -
Sed04g1607 638 ProSiteProfiles Protein kinase domain profile. 298 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1607 Sed-Chr4:30858786 Sed09g1173 Sed-Chr9:35931512 1.30E-92 dispersed
Sed13g0532 Sed-Chr13:3649746 Sed04g1607 Sed-Chr4:30858786 1.8e-312 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79007 PF00069 Pkinase 4.20E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1607 - - - 0.0