Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1630 ATGTCATTCCGAAGTATAGTTCGTGATGTGAGGGATAGCATTGGGAGCCTATCAAGACGGGGCTTCCAGGCCAAGCTGAGTGGTCATCCTAGAGGAAAGTCCATTGTTTCATCGGTTAATGATCTATATGATGAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAATCTTCCACCGGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAGTACATGGCCTTCACGAAGGCACGTAGTTTCCTGTGCTGCGGTATGTCGTTCTTGGAGAATTATGTGCTTGGAGATTGTTAAAGGCCTCGAAATTTGTGGAAAGCTTACCTTCCCAGTGTCATTGAAGCAGCCAGGACCGCGTGATACATCCGTTCAGTGCTTCATTAAGAGGGATAAGTCCAACCTAACATACCACCTCTACTTGTGTCTTAGTCCTGCTCTACTGGTTGAAAATGGGAAGTTTCTTCTTGCTGCAAAGCGAACACGAAGAACTACCAGCACTGAGTACATAATCTCAATGAATGCAGATAACATTTCGAGATCAAGTAGCACATACATTGGAAAGCTGAGGTCAAACTTTCTTGGAACGAAATTCGTTGTCTATGATACTCAACCTTCATACACTGCTGCCTCACTTCCTCCTCTGGGGAAAACCAGTCGTAGATTTTATTCGAAAAAGGTCTCACCGAAAGTCCCAACTGGCTGTTACAACATAGCACATATAAGTTATGAACTAAACGTCTTAGGCACACGGGGACCTCGAAGAATGAATTGTATAATGCATTCAATACCTGTGGCAGCTCTCGATGCAGGTGGTACCGTTCCAAGCCAACCTGAGCTTCTCCCTCCCAACTCCCTTGACGATTCATTTCGGAGTGTATCGTACTCCAAAAGACTAGATCATTCTATGGAGTTCAGTAGTGCTAGATTTTCCGAAATTGGGAGGGCAGCATTGGAGGGAGATGAGGAGGGAAAGATGAGATCTTTGGTTCTAAAAAACAAGCCCCCAAGATGGCATGAACAACTGCAATGTTGGTGCCTCAACTTTCGTGGGCGAGTAACTGTTGCATCGGTGAAGAACTTTCAGTTGATCGCTGCAACACAGCCTGCTGCTGGTGCTCCAACACCGTCTCAACCAGGCCCACCCGAGCATGACAAGATCATCCTGCAGTTCGGCAAAGTCAGTAAAGACATGTTCACGATGGACTATCGATATCCGCTCTCCGCTTTTCAGGCCTTTGCAATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 45.92 MSFRSIVRDVRDSIGSLSRRGFQAKLSGHPRGKSIVSSVNDLYDEPPVVQNGCWANLPPELLYDVIRRLEESESTWPSRRHVVSCAAVCRSWRIMCLEIVKGLEICGKLTFPVSLKQPGPRDTSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLAAKRTRRTTSTEYIISMNADNISRSSSTYIGKLRSNFLGTKFVVYDTQPSYTAASLPPLGKTSRRFYSKKVSPKVPTGCYNIAHISYELNVLGTRGPRRMNCIMHSIPVAALDAGGTVPSQPELLPPNSLDDSFRSVSYSKRLDHSMEFSSARFSEIGRAALEGDEEGKMRSLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPGPPEHDKIILQFGKVSKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31025206 31029403 + Sed0015887.1 Sed04g1630 710233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1630 428 PANTHER TUBBY-RELATED 49 427 - -
Sed04g1630 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Sed04g1630 428 Gene3D Tubby Protein; Chain A 111 428 IPR025659 -
Sed04g1630 428 Pfam F-box-like 54 97 IPR001810 GO:0005515(InterPro)
Sed04g1630 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Sed04g1630 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Sed04g1630 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Sed04g1630 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Sed04g1630 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Sed04g1630 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Sed04g1630 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Sed04g1630 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Sed04g1630 428 CDD F-box_AtTLP-like 54 98 - -
Sed04g1630 428 SUPERFAMILY F-box domain 47 96 IPR036047 GO:0005515(InterPro)
Sed04g1630 428 FunFam Tubby-like F-box protein 111 428 - -
Sed04g1630 428 SUPERFAMILY Tubby C-terminal domain-like 104 428 IPR025659 -
Sed04g1630 428 Pfam Tub family 115 423 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1630 Sed-Chr4:31025206 Sed13g0512 Sed-Chr13:3488451 4.60E-232 dispersed
Sed13g0511 Sed-Chr13:3488451 Sed04g1630 Sed-Chr4:31025206 2.70E-232 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38166 PF01167 Tub 1.00E-114 CL0395 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1630 K19600 - csv:101216314 792.727