Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g1630 | ATGTCATTCCGAAGTATAGTTCGTGATGTGAGGGATAGCATTGGGAGCCTATCAAGACGGGGCTTCCAGGCCAAGCTGAGTGGTCATCCTAGAGGAAAGTCCATTGTTTCATCGGTTAATGATCTATATGATGAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAATCTTCCACCGGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAGTACATGGCCTTCACGAAGGCACGTAGTTTCCTGTGCTGCGGTATGTCGTTCTTGGAGAATTATGTGCTTGGAGATTGTTAAAGGCCTCGAAATTTGTGGAAAGCTTACCTTCCCAGTGTCATTGAAGCAGCCAGGACCGCGTGATACATCCGTTCAGTGCTTCATTAAGAGGGATAAGTCCAACCTAACATACCACCTCTACTTGTGTCTTAGTCCTGCTCTACTGGTTGAAAATGGGAAGTTTCTTCTTGCTGCAAAGCGAACACGAAGAACTACCAGCACTGAGTACATAATCTCAATGAATGCAGATAACATTTCGAGATCAAGTAGCACATACATTGGAAAGCTGAGGTCAAACTTTCTTGGAACGAAATTCGTTGTCTATGATACTCAACCTTCATACACTGCTGCCTCACTTCCTCCTCTGGGGAAAACCAGTCGTAGATTTTATTCGAAAAAGGTCTCACCGAAAGTCCCAACTGGCTGTTACAACATAGCACATATAAGTTATGAACTAAACGTCTTAGGCACACGGGGACCTCGAAGAATGAATTGTATAATGCATTCAATACCTGTGGCAGCTCTCGATGCAGGTGGTACCGTTCCAAGCCAACCTGAGCTTCTCCCTCCCAACTCCCTTGACGATTCATTTCGGAGTGTATCGTACTCCAAAAGACTAGATCATTCTATGGAGTTCAGTAGTGCTAGATTTTCCGAAATTGGGAGGGCAGCATTGGAGGGAGATGAGGAGGGAAAGATGAGATCTTTGGTTCTAAAAAACAAGCCCCCAAGATGGCATGAACAACTGCAATGTTGGTGCCTCAACTTTCGTGGGCGAGTAACTGTTGCATCGGTGAAGAACTTTCAGTTGATCGCTGCAACACAGCCTGCTGCTGGTGCTCCAACACCGTCTCAACCAGGCCCACCCGAGCATGACAAGATCATCCTGCAGTTCGGCAAAGTCAGTAAAGACATGTTCACGATGGACTATCGATATCCGCTCTCCGCTTTTCAGGCCTTTGCAATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA | 1287 | 45.92 | MSFRSIVRDVRDSIGSLSRRGFQAKLSGHPRGKSIVSSVNDLYDEPPVVQNGCWANLPPELLYDVIRRLEESESTWPSRRHVVSCAAVCRSWRIMCLEIVKGLEICGKLTFPVSLKQPGPRDTSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLAAKRTRRTTSTEYIISMNADNISRSSSTYIGKLRSNFLGTKFVVYDTQPSYTAASLPPLGKTSRRFYSKKVSPKVPTGCYNIAHISYELNVLGTRGPRRMNCIMHSIPVAALDAGGTVPSQPELLPPNSLDDSFRSVSYSKRLDHSMEFSSARFSEIGRAALEGDEEGKMRSLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPGPPEHDKIILQFGKVSKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 428 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 31025206 | 31029403 | + | Sed0015887.1 | Sed04g1630 | 710233 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g1630 | 428 | PANTHER | TUBBY-RELATED | 49 | 427 | - | - | |
Sed04g1630 | 428 | ProSitePatterns | Tub family signature 2. | 413 | 428 | IPR018066 | - | |
Sed04g1630 | 428 | Gene3D | Tubby Protein; Chain A | 111 | 428 | IPR025659 | - | |
Sed04g1630 | 428 | Pfam | F-box-like | 54 | 97 | IPR001810 | GO:0005515(InterPro) | |
Sed04g1630 | 428 | ProSitePatterns | Tub family signature 1. | 350 | 363 | IPR018066 | - | |
Sed04g1630 | 428 | PRINTS | Tubby superfamily signature | 406 | 428 | IPR000007 | - | |
Sed04g1630 | 428 | PRINTS | Tubby superfamily signature | 350 | 366 | IPR000007 | - | |
Sed04g1630 | 428 | PRINTS | Tubby superfamily signature | 332 | 349 | IPR000007 | - | |
Sed04g1630 | 428 | PRINTS | Tubby superfamily signature | 170 | 186 | IPR000007 | - | |
Sed04g1630 | 428 | PRINTS | Tubby superfamily signature | 186 | 210 | IPR000007 | - | |
Sed04g1630 | 428 | PRINTS | Tubby superfamily signature | 385 | 404 | IPR000007 | - | |
Sed04g1630 | 428 | PRINTS | Tubby superfamily signature | 236 | 263 | IPR000007 | - | |
Sed04g1630 | 428 | CDD | F-box_AtTLP-like | 54 | 98 | - | - | |
Sed04g1630 | 428 | SUPERFAMILY | F-box domain | 47 | 96 | IPR036047 | GO:0005515(InterPro) | |
Sed04g1630 | 428 | FunFam | Tubby-like F-box protein | 111 | 428 | - | - | |
Sed04g1630 | 428 | SUPERFAMILY | Tubby C-terminal domain-like | 104 | 428 | IPR025659 | - | |
Sed04g1630 | 428 | Pfam | Tub family | 115 | 423 | IPR000007 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g1630 | Sed-Chr4:31025206 | Sed13g0512 | Sed-Chr13:3488451 | 4.60E-232 | dispersed | |
Sed13g0511 | Sed-Chr13:3488451 | Sed04g1630 | Sed-Chr4:31025206 | 2.70E-232 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38166 | PF01167 | Tub | 1.00E-114 | CL0395 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g1630 | K19600 | - | csv:101216314 | 792.727 |