Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1664 ATGGGCAAGCAAGGGCCTTGCTATCATTGTGGAGTTACAAGCACACCCCTCTGGCGTAATGGGCCTCCCGATAAGCCAGTGTTGTGCAATGCATGTGGATCTCGATGGAGAACAAAGGGAAGTCTTGTAAATTATGCCCCTCTTCATGCGCGTGCTGATCCTGATGAGTATGATGATAAAAGGATCTCTAGGTTGAAGAACTTGTCAATGTATAAGAATAAAGAAGTGAAACTGCTTAAAAGAAAGCAGTATCAAGATGATGGAGTTGTGGTTAGGGTTATCCCTGATCACACTCAGAGCTTCCACAAGGTAGTGGATGAAGATACAAGTAATAGATCAAGTTCTGGATCGGCCATATCGAACTCCGAGAGCTGTGCACAGTTTGGTGGTGCAGATGCGAGTGATTTGACAGGTACCTCGCAGTCAACAGCTTGGGAGACAATTGTGCCTTCTAGAAAGCGGACCTGTTTCGGCCGTCCAAAGTCTACCGCAGTTGAGAAGCTCACTAAAGATCTATACACTATTTTACGTGAACAGCAGTCTTACTTTTCTGGATCTTCTGAGGAGGATTTGCTTTTTGAGAGTGAAACTCCAATGGTCTCTGTAGAGATAGGACATGGAAGTGTTCTCATGAAGCATCCAAGTTCAATAGCTCGAGAAGAAGAGTCAGAGGCAAGCTCAATTTCAGTTGATAATAAACAGTTCTTTGTCAAAGAGGCTTATTCAGAGTCATCCATCCTTCCTGTACATTATGAGACTGAGAACAAGGCTGTCAATTTTTCTACTTTTGGAATTGGGAGAAAGCACTCTAATGGTCAGGGGTTCTTGCAGGAGCAAATTAAAAGGGACAGGCCTCAATCAGAAAAATTGCAAGCACTTGGAAATCATAGTTCGCTTCTCTGTAATATAGATCTAAATGACATTTTAAACTCCAAAGAGTTTATGAAGCAATTGACTAGTGAAGATCAGCGAGAATTGATGAAGTTTCTGCCTTCTGTTGATACTGAAGAGCTACCAGACAGCTTGAATAGCATGTTCGCAAGCCCTCAATTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTTGCTGAAGGAGTCTTTGATTTTTCCTTTCCCGGTGTGAAAAGAGAAGACTGCAAAACGTTGAGTAGACTCGTGTTGTGGGATTTGTCAAAATCAAAATGGGTGGAACGATATGATCTACTTAAGAAATGTAGTAGTGGAGAGTCTATTCAAGGTTCTGCTGCTGCATCTAGTAGCTTCATGAATGGCAAGAAATTGCTTGATAGTCAAAACAAAAAGTTTTCAGAAACAAAAACTGCAATGAAGAGTCCGAAAAGGGTGACTACGAAGACAAGCATCGAAAACAAGGAACTTGTTTATAGCGACAGTTCGTGCTTCAGTCCAAGAAGTTTGTTTGCTTTGCCTTATGATGAAGGTTCCTTCACTCTGGAATCTCTGCATTTTGATGAAGATAGTTCAGACCAGGATCTCCTGCTGGATGTGAGGTCAAACAGCTCCTTTCCACAAGCAGAGCTCCTTCATCCAACCATGAGTTTCGGTGTGCAACAGGCAAGCAACAGCAGTAGCTCGGTAAATCTTCGACTTATGAATCGATGA 1620 42.28 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGSLVNYAPLHARADPDEYDDKRISRLKNLSMYKNKEVKLLKRKQYQDDGVVVRVIPDHTQSFHKVVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGTSQSTAWETIVPSRKRTCFGRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFESETPMVSVEIGHGSVLMKHPSSIAREEESEASSISVDNKQFFVKEAYSESSILPVHYETENKAVNFSTFGIGRKHSNGQGFLQEQIKRDRPQSEKLQALGNHSSLLCNIDLNDILNSKEFMKQLTSEDQRELMKFLPSVDTEELPDSLNSMFASPQFKENLNSFKQLLAEGVFDFSFPGVKREDCKTLSRLVLWDLSKSKWVERYDLLKKCSSGESIQGSAAASSSFMNGKKLLDSQNKKFSETKTAMKSPKRVTTKTSIENKELVYSDSSCFSPRSLFALPYDEGSFTLESLHFDEDSSDQDLLLDVRSNSSFPQAELLHPTMSFGVQQASNSSSSVNLRLMNR 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31353844 31362800 - Sed0013985.1 Sed04g1664 710267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1664 539 FunFam GATA transcription factor 27 3 85 - -
Sed04g1664 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 371 IPR044589 -
Sed04g1664 539 Pfam Asx homology domain 285 368 IPR028020 -
Sed04g1664 539 MobiDBLite consensus disorder prediction 102 124 - -
Sed04g1664 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 405 IPR044867 -
Sed04g1664 539 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g1664 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 44 - -
Sed04g1664 539 Gene3D - 292 374 IPR038108 -
Sed04g1664 539 MobiDBLite consensus disorder prediction 110 124 - -
Sed04g1664 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g1664 539 Gene3D - 3 85 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed04g1664 539 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g1664 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4052 Sed-Chr1:69496899 Sed04g1664 Sed-Chr4:31353844 1.50E-179 dispersed
Sed04g0458 Sed-Chr4:3392008 Sed04g1664 Sed-Chr4:31353844 4.40E-206 dispersed
Sed04g1651 Sed-Chr4:31200835 Sed04g1664 Sed-Chr4:31353844 3.30E-173 dispersed
Sed04g1664 Sed-Chr4:31353844 Sed05g1020 Sed-Chr5:8881636 2.50E-86 dispersed
Sed04g1664 Sed-Chr4:31353844 Sed04g1665 Sed-Chr4:31353844 5.40E-262 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38170 PF13919 ASXH 1.70E-09 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1664 - - - 0.0