Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1664 ATGGGCAAGCAAGGGCCTTGCTATCATTGTGGAGTTACAAGCACACCCCTCTGGCGTAATGGGCCTCCCGATAAGCCAGTGTTGTGCAATGCATGTGGATCTCGATGGAGAACAAAGGGAAGTCTTGTAAATTATGCCCCTCTTCATGCGCGTGCTGATCCTGATGAGTATGATGATAAAAGGATCTCTAGGTTGAAGAACTTGTCAATGTATAAGAATAAAGAAGTGAAACTGCTTAAAAGAAAGCAGTATCAAGATGATGGAGTTGTGGTTAGGGTTATCCCTGATCACACTCAGAGCTTCCACAAGGTAGTGGATGAAGATACAAGTAATAGATCAAGTTCTGGATCGGCCATATCGAACTCCGAGAGCTGTGCACAGTTTGGTGGTGCAGATGCGAGTGATTTGACAGGTACCTCGCAGTCAACAGCTTGGGAGACAATTGTGCCTTCTAGAAAGCGGACCTGTTTCGGCCGTCCAAAGTCTACCGCAGTTGAGAAGCTCACTAAAGATCTATACACTATTTTACGTGAACAGCAGTCTTACTTTTCTGGATCTTCTGAGGAGGATTTGCTTTTTGAGAGTGAAACTCCAATGGTCTCTGTAGAGATAGGACATGGAAGTGTTCTCATGAAGCATCCAAGTTCAATAGCTCGAGAAGAAGAGTCAGAGGCAAGCTCAATTTCAGTTGATAATAAACAGTTCTTTGTCAAAGAGGCTTATTCAGAGTCATCCATCCTTCCTGTACATTATGAGACTGAGAACAAGGCTGTCAATTTTTCTACTTTTGGAATTGGGAGAAAGCACTCTAATGGTCAGGGGTTCTTGCAGGAGCAAATTAAAAGGGACAGGCCTCAATCAGAAAAATTGCAAGCACTTGGAAATCATAGTTCGCTTCTCTGTAATATAGATCTAAATGACATTTTAAACTCCAAAGAGTTTATGAAGCAATTGACTAGTGAAGATCAGCGAGAATTGATGAAGTTTCTGCCTTCTGTTGATACTGAAGAGCTACCAGACAGCTTGAATAGCATGTTCGCAAGCCCTCAATTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTTGCTGAAGGAGTCTTTGATTTTTCCTTTCCCGGTGTGAAAAGAGAAGACTGCAAAACGTTGAGTAGACTCGTGTTGTGGGATTTGTCAAAATCAAAATGGGTGGAACGATATGATCTACTTAAGAAATGTAGTAGTGGAGAGTCTATTCAAGGTTCTGCTGCTGCATCTAGTAGCTTCATGAATGGCAAGAAATTGCTTGATAGTCAAAACAAAAAGTTTTCAGAAACAAAAACTGCAATGAAGAGTCCGAAAAGGGTGACTACGAAGACAAGCATCGAAAACAAGGAACTTGTTTATAGCGACAGTTCGTGCTTCAGTCCAAGAAGTTTGTTTGCTTTGCCTTATGATGAAGGTTCCTTCACTCTGGAATCTCTGCATTTTGATGAAGATAGTTCAGACCAGGATCTCCTGCTGGATGTGAGGTCAAACAGCTCCTTTCCACAAGCAGAGCTCCTTCATCCAACCATGAGTTTCGGTGTGCAACAGGCAAGCAACAGCAGTAGCTCGGTAAATCTTCGACTTATGAATCGATGA 1620 42.28 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGSLVNYAPLHARADPDEYDDKRISRLKNLSMYKNKEVKLLKRKQYQDDGVVVRVIPDHTQSFHKVVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGTSQSTAWETIVPSRKRTCFGRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFESETPMVSVEIGHGSVLMKHPSSIAREEESEASSISVDNKQFFVKEAYSESSILPVHYETENKAVNFSTFGIGRKHSNGQGFLQEQIKRDRPQSEKLQALGNHSSLLCNIDLNDILNSKEFMKQLTSEDQRELMKFLPSVDTEELPDSLNSMFASPQFKENLNSFKQLLAEGVFDFSFPGVKREDCKTLSRLVLWDLSKSKWVERYDLLKKCSSGESIQGSAAASSSFMNGKKLLDSQNKKFSETKTAMKSPKRVTTKTSIENKELVYSDSSCFSPRSLFALPYDEGSFTLESLHFDEDSSDQDLLLDVRSNSSFPQAELLHPTMSFGVQQASNSSSSVNLRLMNR 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31353844 31362800 - Sed0013985.1 Sed04g1664 710267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1664 539 FunFam GATA transcription factor 27 3 85 - -
Sed04g1664 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 371 IPR044589 -
Sed04g1664 539 Pfam Asx homology domain 285 368 IPR028020 -
Sed04g1664 539 MobiDBLite consensus disorder prediction 102 124 - -
Sed04g1664 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 405 IPR044867 -
Sed04g1664 539 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g1664 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 44 - -
Sed04g1664 539 Gene3D - 292 374 IPR038108 -
Sed04g1664 539 MobiDBLite consensus disorder prediction 110 124 - -
Sed04g1664 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g1664 539 Gene3D - 3 85 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed04g1664 539 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g1664 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1664 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4052 Sed-Chr1:69496899 Sed04g1664 Sed-Chr4:31353844 1.50E-179 dispersed
Sed04g0458 Sed-Chr4:3392008 Sed04g1664 Sed-Chr4:31353844 4.40E-206 dispersed
Sed04g1651 Sed-Chr4:31200835 Sed04g1664 Sed-Chr4:31353844 3.30E-173 dispersed
Sed04g1664 Sed-Chr4:31353844 Sed05g1020 Sed-Chr5:8881636 2.50E-86 dispersed
Sed04g1664 Sed-Chr4:31353844 Sed04g1665 Sed-Chr4:31353844 5.40E-262 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed03g1471 . 71 348 C2C2-Gata Transcription Factor Family AT5G25830 53.9 1.2e-67 254.6
Sed12g0790 . 3 149 C2C2-Gata Transcription Factor Family AT3G06740 58.4 6.7e-37 151.4
Sed06g2170 . 96 263 C2C2-Gata Transcription Factor Family AT2G45050 51.3 2.2e-43 173.7
Sed07g1682 . 103 275 C2C2-Gata Transcription Factor Family AT4G36240 50.3 3.0e-39 159.8
Sed04g1664 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.8 2.3e-137 486.9
Sed01g4052 . 1 513 C2C2-Gata Transcription Factor Family AT4G17570 52.0 1.4e-129 461.1
Sed05g1020 . 1 234 C2C2-Gata Transcription Factor Family AT4G17570 61.3 2.2e-71 267.7
Sed05g1021 . 1 234 C2C2-Gata Transcription Factor Family AT4G17570 61.3 2.2e-71 267.7
Sed05g1020 . 1 232 C2C2-Gata Transcription Factor Family AT5G47140 52.7 3.5e-55 213.8
Sed05g1021 . 1 232 C2C2-Gata Transcription Factor Family AT5G47140 52.7 3.5e-55 213.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38170 PF13919 ASXH 1.70E-09 No_clan Sed TF