Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1666 ATGAGTGCTGGAAGTGGGAATCGGTTAATCTCCGTTCAGCCGGATGAGTTGAAGTTTCAGATTGAGTTGGACAAGCAGAGCTTTTGTGATCTTAAAGTTGCAAACAACACAGAACATCATGTTGTCTTTAAGGTCAAAACAACCTCACCCAAGAAATACTTTGTGCGTCCCAACACTGGTGTTGTACAGCCTTGGGATTCTTGCATCATAAGAGTGACTCTCCAAGCCATGCGAGAGTACCCTGCAGATATGCATTGCAAAGATAAGTTTCTCTTACAAAGTACAATAGTCCCTCCAAATACTGATGTAGATGAGCTTCCGGCTGATGCTTTCAGTAAGGAGAGTGGACGGACTATCGAGGAATGCAAGCTTAAGGTTATCTATATGTCTCCTAATTCAGATATGGGGAACCCAGAAGATGAAAAGAACTCATCTCAAAGCTCCTCTCTGGCCTTGCAACGTCTGAAGGAAGAAAGAGACACGGTTATAAAGCAAACCCAACAATTACAACAGGAACTGGACATGATGAAGAGACGTAAACATCGAAAAGGCGATCCTGGATTCTCGTTTATGTTCGCGATCTTTGTGGGAATCGTTGGGATCATGGCAGGTTTCCTCTTGAATCTCACATTATCTTCACCATCTACGGAATGA 654 43.27 MSAGSGNRLISVQPDELKFQIELDKQSFCDLKVANNTEHHVVFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAMREYPADMHCKDKFLLQSTIVPPNTDVDELPADAFSKESGRTIEECKLKVIYMSPNSDMGNPEDEKNSSQSSSLALQRLKEERDTVIKQTQQLQQELDMMKRRKHRKGDPGFSFMFAIFVGIVGIMAGFLLNLTLSSPSTE 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31377033 31381684 - Sed0027273.1 Sed04g1666 710269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1666 217 MobiDBLite consensus disorder prediction 132 151 - -
Sed04g1666 217 Coils Coil 152 179 - -
Sed04g1666 217 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 9 207 IPR016763 GO:0005789(PANTHER)|GO:0005789(InterPro)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Sed04g1666 217 PIRSF VAMP_assoc_prot 2 158 IPR016763 GO:0005789(InterPro)
Sed04g1666 217 PIRSF VAMP_assoc_prot 135 209 IPR016763 GO:0005789(InterPro)
Sed04g1666 217 ProSiteProfiles Major sperm protein (MSP) domain profile. 9 129 IPR000535 -
Sed04g1666 217 MobiDBLite consensus disorder prediction 136 151 - -
Sed04g1666 217 Pfam MSP (Major sperm protein) domain 10 113 IPR000535 -
Sed04g1666 217 Gene3D Immunoglobulins 3 133 IPR013783 -
Sed04g1666 217 SUPERFAMILY PapD-like 5 133 IPR008962 -
Sed04g1666 217 FunFam Vesicle-associated protein 1-1 4 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1666 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0456 Sed-Chr4:3373981 Sed04g1666 Sed-Chr4:31377033 9.30E-109 dispersed
Sed04g0457 Sed-Chr4:3373981 Sed04g1666 Sed-Chr4:31377033 2.80E-99 dispersed
Sed04g1666 Sed-Chr4:31377033 Sed05g0971 Sed-Chr5:8077498 4.50E-42 dispersed
Sed04g1666 Sed-Chr4:31377033 Sed01g3999 Sed-Chr1:69055964 1.50E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g534 Blo02g01044 Blo03g00161 Bda06g00029 Bda08g00576 Bpe05g00582 Bpe07g00176 . . . Cmo16g01161 . Cma15g01125 . Car15g01030 Sed04g1666 Cpe14g00917 . Bhi11g00073 Tan01g2092 Cmetu06g0529 . . Mch10g1587 . . . . . . . . . . . . . Csa05g00419 Chy09g01090 . Blo03g00417 . Bda07g00001 . . Bpe11g00268 Bma05g00421 Bma12g00643 . . Cmo15g01185 . Cma16g01109 . Car16g01047 . Cpe13g00231 Bhi12g00443 . . Lac11g2281 Hepe06g1669 . Lcy12g0040 Cla01g00395 Cam01g0412 Cec01g0403 Cco01g0424 Clacu01g0413 Cmu01g0394 Cre09g2117 Lsi09g00420 . . Cme09g01619
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005066 2 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 0 41