Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1680 ATGATATACGGACAGAGTAATGGGTGTGAAAATTTACGCCGGCACCATTTATTGGGAGATTCCGACGCTCTCCGATGTGGGAATTTCGCCGTCACCGCCTCCGCCGGGCCGATTTTCAGCGGGATCTCCAGTTTCAACTGCTTGTACCCTTGTTTGACCGAAAATTGGGGGGATTTGCCACTCAAGGAAGATGACTCTGAAGATATGGTCCTCGCCGGAGTTCTACACGATGCTGTTCGGTTCGGCTGGGTTCCGTCACTCGGGTCGGATACCTTCCATTTTGGTTTCCCCGATGTCAAGCCGGAGCCGGAGATTCTGCCGCCGGTGAACATCTTCTCGGAAGTTGTGGATGGGAAGGTGGTGGTAGCGACGGCGGCGCCGTTGCCGGCGGTGGTTCCGGCGAAAGGGAAGCATTACCGGGGCGTCCGGCAGCGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGGGACCCGGCGAAAAACGGGGCTCGGGTTTGGCTGGGGACGTTTGAGACGGCGGAGGACGCGGCGTTGGCTTATGACCGCGCCGCCTACCGGATGCGGGGCTCCAAAGCTCTTCTCAATTTCCCGCTTCGGGTCAACTCCGGCGAACCCGACCCGGTTCGAGTGACGTCGAAGCGGTTGTCATCGCGATCTTCGGCGGAGCCTACTTCGTCGGTGGAGAGTGGGACCCCCAAGCGGCGGAAGAAGGCGGCAACGTTCGCCGGAGTTGATACAACGGTGGGGACCAGTGCAATGCAAGTGGTGGAAGCTGATGTAGCGGAGGGTACACGTGGCAGACAATTATTGGGAGAGTAA 816 59.56 MIYGQSNGCENLRRHHLLGDSDALRCGNFAVTASAGPIFSGISSFNCLYPCLTENWGDLPLKEDDSEDMVLAGVLHDAVRFGWVPSLGSDTFHFGFPDVKPEPEILPPVNIFSEVVDGKVVVATAAPLPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRLSSRSSAEPTSSVESGTPKRRKKAATFAGVDTTVGTSAMQVVEADVAEGTRGRQLLGE 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31475757 31477133 - Sed0008061.1 Sed04g1680 710283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1680 271 SMART rav1_2 138 202 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g1680 271 Gene3D AP2/ERF domain 137 199 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g1680 271 MobiDBLite consensus disorder prediction 204 239 - -
Sed04g1680 271 CDD AP2 137 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g1680 271 FunFam Ethylene-responsive transcription factor 2 137 197 - -
Sed04g1680 271 MobiDBLite consensus disorder prediction 211 227 - -
Sed04g1680 271 SUPERFAMILY DNA-binding domain 138 198 IPR016177 GO:0003677(InterPro)
Sed04g1680 271 PANTHER DNA-BINDING DOMAIN 125 224 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Sed04g1680 271 Pfam AP2 domain 138 189 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g1680 271 PRINTS Ethylene responsive element binding protein signature 139 150 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g1680 271 PRINTS Ethylene responsive element binding protein signature 162 178 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g1680 271 ProSiteProfiles AP2/ERF domain profile. 138 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4041 Sed-Chr1:69432874 Sed04g1680 Sed-Chr4:31475757 1.40E-60 dispersed
Sed04g1680 Sed-Chr4:31475757 Sed05g1007 Sed-Chr5:8711649 3.20E-61 dispersed
Sed04g1680 Sed-Chr4:31475757 Sed04g1681 Sed-Chr4:31501024 9.00E-24 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38171 PF00847 AP2 1.10E-14 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1680 K09286 - csv:101203663 360.918