Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1684 ATGTATATTGAGGAATTAAAGGAAGGGGAGTTGCAGAATGGGGAAGAGGTAAATTCAGGTTCTGTTGTTGGTAATTTGGAGAGCCAGAGCGTTGTTAAGTCTGATGTCAAAAGGATTGTTGTTGGAGTTGGGGCTCGTGTTCTTTTCTACCCGACTTTGGCTTACAATGTTTTCAGAAATAAGGTTCAGACTGAGTTTCGTTGGTGGGACAGGGTCGATGAGTTTATATTGTTAGGTGCTGTTCCATTCCCTGCTGATGTTCCTCGTTTAAAGGAGGTTGGGGTTCGAGGAGTGATAACATTAAATGAGCCATATGAGACTTTGGTTCCTTCAACTCTATATCTTGATCATGACATTGATCATTTGACCATTCCGACTAGAGACTATTGCTTTGCACCTTTGTTGAGTGACATTAGCATTGCTGTAAATTTCATCCATGAAAATGCAACACATGGACAGACTACATATGTTCATTGTAAAGCTGGACGAGGGCGTAGCACAACCATTGTCATTTGCTATTTGGTGCAATACAAGCAAATGACGCCAGATGAAGCTTTTCAACATGTGAAGGCAATCAGGCCAAGGGTGCTTTTAGCATCATCACAGTGGCAGGCTGTCATGGAATTCTACCACCTGATTGTGTTGAAGGGTGTTTCCTCCTGCCACCTTGGTGATCTAGAAAAGAAAGTATCACGATCATCACGCAATCTTATCACATTTGATGATAGTTCTGCTGTTGTTGTAAAAGAATCCGATCTTGAAGGCTATGACGAAAGTATCATCCAAAGTGAAATGGGTGATATCTGGGCAGATTTAAGTGTAGTCTGCAGGGTTCGTGTTGCTGGGCAGGCGGCCCTCACAAGAATCTCCTGTTTGTGGTTGAGCTATCGTGCAAAACACCATAGCCAGAAGATTTCAGGAGATGATATAGGCGTTGGGAACAGCTGTTCACTCGGTGCGACTCATTTGGAAGGGTTCAGTGTAGACATTCATGTCTATTAA 1002 42.91 MYIEELKEGELQNGEEVNSGSVVGNLESQSVVKSDVKRIVVGVGARVLFYPTLAYNVFRNKVQTEFRWWDRVDEFILLGAVPFPADVPRLKEVGVRGVITLNEPYETLVPSTLYLDHDIDHLTIPTRDYCFAPLLSDISIAVNFIHENATHGQTTYVHCKAGRGRSTTIVICYLVQYKQMTPDEAFQHVKAIRPRVLLASSQWQAVMEFYHLIVLKGVSSCHLGDLEKKVSRSSRNLITFDDSSAVVVKESDLEGYDESIIQSEMGDIWADLSVVCRVRVAGQAALTRISCLWLSYRAKHHSQKISGDDIGVGNSCSLGATHLEGFSVDIHVY 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31524681 31530128 - Sed0012311.1 Sed04g1684 710287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1684 333 ProSiteProfiles Dual specificity protein phosphatase domain profile. 68 215 IPR020422 GO:0006470(InterPro)
Sed04g1684 333 SMART dsp_5 71 212 IPR020422 GO:0006470(InterPro)
Sed04g1684 333 FunFam Dual specificity phosphatase domain protein 68 215 - -
Sed04g1684 333 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 136 204 IPR000387 GO:0016311(InterPro)
Sed04g1684 333 ProSitePatterns Tyrosine specific protein phosphatases active site. 157 167 IPR016130 GO:0016311(InterPro)
Sed04g1684 333 Pfam Dual specificity phosphatase, catalytic domain 112 210 IPR000340 GO:0016311(InterPro)
Sed04g1684 333 CDD PTPMT1 68 210 IPR044596 GO:0004721(InterPro)
Sed04g1684 333 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 288 - -
Sed04g1684 333 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 61 212 IPR029021 -
Sed04g1684 333 Gene3D Protein tyrosine phosphatase superfamily 68 214 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1757 Sed-Chr3:11619312 Sed04g1684 Sed-Chr4:31524681 6.40E-81 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1684 - - - 0.0