Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g1684 | ATGTATATTGAGGAATTAAAGGAAGGGGAGTTGCAGAATGGGGAAGAGGTAAATTCAGGTTCTGTTGTTGGTAATTTGGAGAGCCAGAGCGTTGTTAAGTCTGATGTCAAAAGGATTGTTGTTGGAGTTGGGGCTCGTGTTCTTTTCTACCCGACTTTGGCTTACAATGTTTTCAGAAATAAGGTTCAGACTGAGTTTCGTTGGTGGGACAGGGTCGATGAGTTTATATTGTTAGGTGCTGTTCCATTCCCTGCTGATGTTCCTCGTTTAAAGGAGGTTGGGGTTCGAGGAGTGATAACATTAAATGAGCCATATGAGACTTTGGTTCCTTCAACTCTATATCTTGATCATGACATTGATCATTTGACCATTCCGACTAGAGACTATTGCTTTGCACCTTTGTTGAGTGACATTAGCATTGCTGTAAATTTCATCCATGAAAATGCAACACATGGACAGACTACATATGTTCATTGTAAAGCTGGACGAGGGCGTAGCACAACCATTGTCATTTGCTATTTGGTGCAATACAAGCAAATGACGCCAGATGAAGCTTTTCAACATGTGAAGGCAATCAGGCCAAGGGTGCTTTTAGCATCATCACAGTGGCAGGCTGTCATGGAATTCTACCACCTGATTGTGTTGAAGGGTGTTTCCTCCTGCCACCTTGGTGATCTAGAAAAGAAAGTATCACGATCATCACGCAATCTTATCACATTTGATGATAGTTCTGCTGTTGTTGTAAAAGAATCCGATCTTGAAGGCTATGACGAAAGTATCATCCAAAGTGAAATGGGTGATATCTGGGCAGATTTAAGTGTAGTCTGCAGGGTTCGTGTTGCTGGGCAGGCGGCCCTCACAAGAATCTCCTGTTTGTGGTTGAGCTATCGTGCAAAACACCATAGCCAGAAGATTTCAGGAGATGATATAGGCGTTGGGAACAGCTGTTCACTCGGTGCGACTCATTTGGAAGGGTTCAGTGTAGACATTCATGTCTATTAA | 1002 | 42.91 | MYIEELKEGELQNGEEVNSGSVVGNLESQSVVKSDVKRIVVGVGARVLFYPTLAYNVFRNKVQTEFRWWDRVDEFILLGAVPFPADVPRLKEVGVRGVITLNEPYETLVPSTLYLDHDIDHLTIPTRDYCFAPLLSDISIAVNFIHENATHGQTTYVHCKAGRGRSTTIVICYLVQYKQMTPDEAFQHVKAIRPRVLLASSQWQAVMEFYHLIVLKGVSSCHLGDLEKKVSRSSRNLITFDDSSAVVVKESDLEGYDESIIQSEMGDIWADLSVVCRVRVAGQAALTRISCLWLSYRAKHHSQKISGDDIGVGNSCSLGATHLEGFSVDIHVY | 333 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 31524681 | 31530128 | - | Sed0012311.1 | Sed04g1684 | 710287 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g1684 | 333 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 68 | 215 | IPR020422 | GO:0006470(InterPro) | |
Sed04g1684 | 333 | SMART | dsp_5 | 71 | 212 | IPR020422 | GO:0006470(InterPro) | |
Sed04g1684 | 333 | FunFam | Dual specificity phosphatase domain protein | 68 | 215 | - | - | |
Sed04g1684 | 333 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 136 | 204 | IPR000387 | GO:0016311(InterPro) | |
Sed04g1684 | 333 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 157 | 167 | IPR016130 | GO:0016311(InterPro) | |
Sed04g1684 | 333 | Pfam | Dual specificity phosphatase, catalytic domain | 112 | 210 | IPR000340 | GO:0016311(InterPro) | |
Sed04g1684 | 333 | CDD | PTPMT1 | 68 | 210 | IPR044596 | GO:0004721(InterPro) | |
Sed04g1684 | 333 | PANTHER | PHOSPHATIDYLINOSITOL PHOSPHATASE | 1 | 288 | - | - | |
Sed04g1684 | 333 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 61 | 212 | IPR029021 | - | |
Sed04g1684 | 333 | Gene3D | Protein tyrosine phosphatase superfamily | 68 | 214 | IPR029021 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1757 | Sed-Chr3:11619312 | Sed04g1684 | Sed-Chr4:31524681 | 6.40E-81 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g1684 | - | - | - | 0.0 |