Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1686 ATGGCTTCCAAAGACGACAGCCTCGGCTTAACCCTCGGATTGAGCTTCGATTCCCATCCCTTGCAGCTCAATCTCATGCCTTACCACGACGCTTCCTCAGATCGGACTTCGGAAACCGGGAGATCGCTGATCCGAGGAATCGACGTGAACCGGACACCGCCGTCGACGGCGGATTGCGACGAGGAGGAGGAGGAGGCGGCGATGTCCAGCCCCAACAGTACCATTTCGAGCGTACTGAGTGGGAAGAGGAGTGAACGGGAGGCCAACGGCGGCGACGGCGACGGCGACAGAGCTTGTTCGAGAGGAATCAGCGACGAAGAAGAAGACGCTGAAACTTCTAGGAAGAAGCTTCGGCTCACCAAAGATCAGTCCGCCGTTTTGGAAGAAAGCTTCAAACAACACAATACTCTCAATCCTAAGCAAAAGTTGGCGTTGGCTAAACAGTTGGGTCTCCGCCCCAGACAAGTCGAAGTCTGGTACCAAAACCGAAGGGCAAGGACAAAATTGAAGCAAACAGAAGTAGATTGCGAGTTTCTAAAGAGATGCGTGGAGAATCTGACGGACGAAAACAGGCGGTTGCAAAAGGAAGTTCAAGAACTGAGAGCACTGAAACTTTCCCCTCACTTCTACATGCGCATGACCCCACCCACCACCCTCACCATGTGCCCCTCATGTGAGCGCGTGGCGGTCCCACCCGCCACCTCAGCACCCCCCACTCGCATGGGCCTGGCCCAAGCCCAACCTCAGGCCCACCACGCTCACCCGATCCACATCAACCCGTGGGCCTCCGCCCGCCCGTTCAACGCCCTCCATCCTCGCTCGTAA 825 56.73 MASKDDSLGLTLGLSFDSHPLQLNLMPYHDASSDRTSETGRSLIRGIDVNRTPPSTADCDEEEEEAAMSSPNSTISSVLSGKRSEREANGGDGDGDRACSRGISDEEEDAETSRKKLRLTKDQSAVLEESFKQHNTLNPKQKLALAKQLGLRPRQVEVWYQNRRARTKLKQTEVDCEFLKRCVENLTDENRRLQKEVQELRALKLSPHFYMRMTPPTTLTMCPSCERVAVPPATSAPPTRMGLAQAQPQAHHAHPIHINPWASARPFNALHPRS 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31544952 31547286 - Sed0004303.1 Sed04g1686 710289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1686 274 SUPERFAMILY Homeodomain-like 108 171 IPR009057 -
Sed04g1686 274 ProSitePatterns 'Homeobox' domain signature. 145 168 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed04g1686 274 FunFam Homeobox-leucine zipper protein 18 100 175 - -
Sed04g1686 274 SMART HOX_1 112 174 IPR001356 GO:0003677(InterPro)
Sed04g1686 274 Gene3D - 120 166 - -
Sed04g1686 274 Coils Coil 103 123 - -
Sed04g1686 274 MobiDBLite consensus disorder prediction 68 83 - -
Sed04g1686 274 Pfam Homeobox associated leucine zipper 170 204 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g1686 274 Coils Coil 169 206 - -
Sed04g1686 274 CDD homeodomain 114 171 IPR001356 GO:0003677(InterPro)
Sed04g1686 274 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 250 IPR050762 -
Sed04g1686 274 CDD bZIP 163 202 - -
Sed04g1686 274 Pfam HD-ZIP protein N terminus 32 87 IPR006712 GO:0005634(InterPro)
Sed04g1686 274 MobiDBLite consensus disorder prediction 85 116 - -
Sed04g1686 274 MobiDBLite consensus disorder prediction 30 116 - -
Sed04g1686 274 Pfam Homeodomain 114 168 IPR001356 GO:0003677(InterPro)
Sed04g1686 274 ProSiteProfiles 'Homeobox' domain profile. 110 170 IPR001356 GO:0003677(InterPro)
Sed04g1686 274 PRINTS Lambda-repressor HTH signature 150 166 IPR000047 GO:0003677(InterPro)
Sed04g1686 274 PRINTS Lambda-repressor HTH signature 141 150 IPR000047 GO:0003677(InterPro)
Sed04g1686 274 SMART halz 170 213 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1686 Sed-Chr4:31544952 Sed12g0039 Sed-Chr12:269598 4.50E-71 dispersed
Sed04g1686 Sed-Chr4:31544952 Sed12g1276 Sed-Chr12:9306669 1.00E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38173 PF04618 HD-ZIP_N 2.80E-17 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1686 K09338 - csv:101223208 394.43