Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1720 ATGAGGGGTATTTCATTTCACTTTCCTGGGAAGGGGGAGTTGGAAATTTCACCCGCTTTTTCTTCTGTTTCTTCTCCGATTTGCTCCTCTGGGTTTTCAGATAAGTTTCTTAAGAAACCAGAAACTCAACAAGAACAAGAACAAGGGGTTTCTTATTTTCTTCTGCCCAACAACGAACCCACTTCCGTTCTTCATATGAGAAGCCCCAGTCCTCCCACATCGGCTTCTACTCTCTCTTCTTCCTTTGGAGGCTGCGCCGGCGCCGGCTCTGCTCCTTCTCTTCCGCCGGAGACTCCTTCTGTTGGGCCTCTCGCCGGACCTGGGGTTGGGGTTGGGACTCCTGTTTTTCCCGCTGGATTGGACCGATGTGGGGTTGGATTGGAATATTTGGAGACTATGTGGTCGGAATCGGCTGGACCTGAGCAGTCGTTTCTCCGCTGGATCGCCGGAGATGTTGTTGAAGATCCCACTCTGGGGATTAAAGGCCTTTTGCAGAATGGGAATATGCCCTTTGATTTGGATGGCAATGCCGGTATCGGAATCGTCGACCCGGGTTCCGAATTCGACCCTGCTGCGGATGCTGGTAATGTTCTTGCTAATATCAATTCTAATTTATCGTTTCCTCTTCCTGCTTCTACTACTGGGGTTTCGGATTTGAATGGTGCTAATAACAAGGGTTTTAATCGAACAACTTGTGGGGCTGTTAATTACAAGAGTTGTTCTAGTTTGGGGTTGAATAATCGCCATGGAAATTTCAATGTTCAGAACCCTATCTTTACTGGGTCTCTTGAGAATCTTGTTGTTCCTGTTTCTGGTATGGTTTATCCTCAGCAGCTTCAGCCATTTGAAAGCCTTGATGAGAAGCCTCAGAATTTGAATGCTCAGGTTTTGTTGAACCAGCATCAGCAGCCTCCCAATCCTAGCTTTTTTGTGCCTTTGGCATTTGGTCAACAGGAACAGCACCTGCAGCCCCAGCTGAAGAGGCACAATTCAAGTGATGGGTTCGGTCCGAATGGGCAGATCCCGAAAGTTTCGTTTATGGATCCAGTGAATGAGATTTTTCTTAGGAATCATCAGTTGCAGGTGCTGCAGCAGCAGCAGCAGCTTGGTTATCCGCCGGGTTTGCAGTTCCTTCCCCAGCAGAAGGTAATGTCGCCAAAGCCGAAAGTTGTAGGGCTTGGCGACGAAATGGCGTATCACAATCCCCCACAGCAGCAGCAGCAGCAGCAACATGCTTTGCTCGACCAGCTCTACAAGGCATCAGAGCTGGTAGGGTCTGGGAATTTCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCTGTTGGAAAGCCCCTTCAAAGGGCTGCTTTCTACTTCAAGGAGGCTCTTCAATTGCTCCTTCTTATGAACAATCCAGTTAATCCTCCTCCACCTCGCTGCCCGACACCGTGTGATGTGATCTTCAAGATGGGTGCTTACAAGGCATTTTCGGAGATCTCCCCGCTCATTCAGTTTGTGAATTTCACTTGCAACCAAGCACTACTTGAGGCCCTCGATGATGTTGATCGAATTCACATTATTGATTTTGATATTGGTTTCGGAGCGCAGTGGGCTTCTTTTATGCAGGAACTGTCCTTGAGGAACCGGGGTACTCCATTGCTAAAAATCACTGCTTTTGCCTCGCCCTCCACTCACCATCCGATTGAACTCGGGCTTATGCGCGATAATCTCACACAATTTGCTAATGACATTGGAATAAAGTTTGAGTTTGAAGTGGTTAATTTTGATTCTTTGAACCAAAACTCATTCTCCTTGCCATTTTCTCGTGCAAGCGAAAACGAGGCTATTGCAGTAAACTTCCCTCTATGGTCCTCATCAAATCAACCAGCAATGCTTCCGTCTCTCCTCCGTTTCATCAAGCAACTCTCACCGAAAATCGTGGTATCACTTGACCGAGGGTGTGATCGGAGTGACCTCCCATTTCCTCAGCATATGCTTCAGGCAGTTCAATCCTACATTAGCCTCCTGGAATCTCTGGATGCTATCAACATGAATTCGGATGCTGTGACCAAGATCGAAAGGTATCTTTTGCAACCAAGAATCGAAAGCATTGTTCTGGGGCGGCTTCGAGCACCTGAAAGGATGCCTCTTTGGAAGACACTCTTTGCATCAGCCGGGTACACACCAGTAACATTCAGCAACTTCACGGAAACTCAAGCCGAATGTGTAGCCAAGAGAACTTCTGTGAGGGGATTTCACGTGGAGAAACACCAGGCTTCCCTAGTTTTATGCTGGCAGCACCGGGAGCTCATATCTGCTTCAGCTTGGAGGTGCTAG 2331 48.13 MRGISFHFPGKGELEISPAFSSVSSPICSSGFSDKFLKKPETQQEQEQGVSYFLLPNNEPTSVLHMRSPSPPTSASTLSSSFGGCAGAGSAPSLPPETPSVGPLAGPGVGVGTPVFPAGLDRCGVGLEYLETMWSESAGPEQSFLRWIAGDVVEDPTLGIKGLLQNGNMPFDLDGNAGIGIVDPGSEFDPAADAGNVLANINSNLSFPLPASTTGVSDLNGANNKGFNRTTCGAVNYKSCSSLGLNNRHGNFNVQNPIFTGSLENLVVPVSGMVYPQQLQPFESLDEKPQNLNAQVLLNQHQQPPNPSFFVPLAFGQQEQHLQPQLKRHNSSDGFGPNGQIPKVSFMDPVNEIFLRNHQLQVLQQQQQLGYPPGLQFLPQQKVMSPKPKVVGLGDEMAYHNPPQQQQQQQHALLDQLYKASELVGSGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLMNNPVNPPPPRCPTPCDVIFKMGAYKAFSEISPLIQFVNFTCNQALLEALDDVDRIHIIDFDIGFGAQWASFMQELSLRNRGTPLLKITAFASPSTHHPIELGLMRDNLTQFANDIGIKFEFEVVNFDSLNQNSFSLPFSRASENEAIAVNFPLWSSSNQPAMLPSLLRFIKQLSPKIVVSLDRGCDRSDLPFPQHMLQAVQSYISLLESLDAINMNSDAVTKIERYLLQPRIESIVLGRLRAPERMPLWKTLFASAGYTPVTFSNFTETQAECVAKRTSVRGFHVEKHQASLVLCWQHRELISASAWRC 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31820590 31823778 - Sed0003392.1 Sed04g1720 710323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1720 776 ProSiteProfiles GRAS family profile. 404 775 IPR005202 -
Sed04g1720 776 Pfam GRAS domain family 414 775 IPR005202 -
Sed04g1720 776 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 406 774 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1720 Sed-Chr4:31820590 Sed04g2273 Sed-Chr4:36479845 5.60E-135 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38177 PF03514 GRAS 5.30E-93 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1720 K27747 - csv:101218630 1207.2