Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1759 ATGTCTCTCTCCATGAAAGCTGATGTTCTTCAAGGAACGCTTGTCGGCTCCGAGATTCATGGCTTCCATACATTACAAGATTTGGATGTTACAAACATCAGGGAGGAAGCAAGTGCAAGATGGCTTCGTCCAAATGAAATCAATGCGTTACTTTGTAACTACAAATATTTTGTCATCCATGTCAAGCCAGTGAACTTGCCCAAAGGTGGAACCATTGTACTATTTGACCGCAAGATGCTAAGGAATTTCCGCAAAGATGGACATAATTGGAAGAAAAAAAAAGACGGGAAGACGGTAAAAGAAGCACATGAACACCTAAAAGTTGGCAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTGGATAACCCAACATTTGTTCGTCGGTGTTATTGGCTCCTTGATAAGACTCTTGAGCACATTGTCCTGGTTCATTACCGTGAAACACAAGAGAGTTCTCCCTCCAGATCTATGAATTCAAATTCTGGTTCTGTCTCTGACCCATCGACTCCTTGGCTTTTATCAGAAGAGCTTGATTCTAGTGCTAATCGTGTTTATTCTGTTGATGAAAATGAACTGTCAGAGCCTAGTGACACTACAACAGCCATGAATCATGAAAAACGGCTTCATGAGATCAACACACTTGAGTGGGATGAACTTCTTGCGACAGACGAGCCTTTCAAACCTGCCATGCCTAAAGGAGACAGACTTTCATACTTCGACCAACGGAACCAAGTCCCGATGAATGTGACCAGCAATTTATTGGGGGACACGTCTTCATTTAATAATCCAGTTGGGTCAACTGCGAGTGCCAACAGCAATATCAGTTTTACAGATAGTACCTATATGCAGTTAATAAGTGGTCAAACAAATTTGAATGTAGAGAGTAAGGAATCTATTCCAATTACTTCATTGGACAATTTGTTAAATGATGGATTGCAAAGTCAGGACAGCTTCGGACGATGGATTAATGAAGTCATCACTGAGTCTCCTGGTGCAGTCATTGATCCTGCTATTGTGCCATCCATTTCATCCATTCCCAGTTCCTGTACTGATCCGACATTAGATCACCATCAATCTTCTGTTATGGAGCAAATCTTTAACATAACTGATATCTCACCTGCATGGGCCTTTTCAACAGAAAAAACAAAGATTCTAATCACAGGATATTTTCACAATGAATACGAACATCTGGCCAAGTCCAATATATTGGTTGTGTGTGGTAATATTAGCGTTAATGCTGATTTTATTCAACCTGGAGTTTATCGCTGTCTGGTACAACCACATTCAAGGGGACTAGTACAGTTATACATGAGCTTAGATGGTCATAAACCTATTAGCCAAGTTCTGAATTTTGAGTATCGTGCACCACTTTTACAAGAGCCAGTTGCTTCAGAACAGATTCAAAAGTGGGAAGAGTTTCAAGTTCAGATGCGGCTTGCTCATCTCTTGTTCTCTACATCCAAAAGCATAAGCATCATGTCTACTAAATTGTCACCCGTTGCCCTGAACGAGGCCAAGAAATTTGCTGTCAAAACTTCTGACATTTCTGATAGTTGGATTTATTTGTTAAACTCGATTGAAGAAAATAACACTCCATTTCCACAAGCAATAGAGGGAGTTCTTGAGACCATTTTGAGAAGCAGGTTAAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGTTCAAAGAAAAGCACTGATTTTGATGTAAAAGGTCAAGGAGTAATCCATTTGTGTGCCATATTGGGATATACCTGGGCTGTACATCTATTTGACTGGTCTGGTTTATCAATAAATTTTCGAGATAAATTTGGATGGACAGCTCTTCACTGGGCATCTTATTATGGAAGGGAGAAAATGGTAGCTGTTCTTTTATCAGCAGGGGCGAAGCCAAACTTGGTAACTGATCCCTCATCAAAGAACCCTCTGGGATACACAGCTGCAGATCTTGCATCTTTGAATGGTTATGATGGCATATCTGCTTATCTTTCTGAAAAGGCTTTGGTATCACATTTTAATGAGATGAGCTTGGCTGGAAATGTTAGTGGTTCATTGGAAACTAGTACAACTACCGATGCCATTTACCCAGATAGCATCAGCGAGGATCAGATGTATATGAAAGAAACATTAACAGCTTACCGAACAGCAGCTGATGCGGCAGCACGCATACAAACTGCATTCCGTGAGCAATCTTTAAAGCAAAGGACTCGAGCAATTGCATTCTCGACCCCTGAAGATGAAGCACGTGGTATTATTGCAGCCATGAAAATTCAACATGCCTACCGCAACTTTGAGGTGCGAAAACAAATGGCAGCTGCTGCTCGTATTCAGTACAGATTCCGTACTTGGAAGATCCGCAAAGACTTTCTTAATATGCGTCGTCATGCTATTAGAATTCAAGCTGCATTTAGAGGTTTCCAAGTGCGGAGGCAGTATCGAAAGATCGTTTGGTCGGTAGGAATATTTGAGAAAGCTGTACTGCGTTGGCGTCTTAAGCGAAAAGGGTTACGTGGGCTTCAAGTTGCACCTGCTGAAGTGACAGAACAGCAGGAAACTGACAAAGTAGAGGACTTTTACCTTGCGTCTCAAAAGCAAGCCGAAGAGCGAGTTGAGAATGCTGTTGTCCGGGTGCAGGCTATGTTTCGATCAAAGAAAGCTCAAGAGGAGTATCGTAGGATGAAGTTAACCTACAATGAAGCAGCGCTGGAATATGAAGAGCTTTCAAATCCTGATATGAAATTGAGTCACTGA 2754 41.5 MSLSMKADVLQGTLVGSEIHGFHTLQDLDVTNIREEASARWLRPNEINALLCNYKYFVIHVKPVNLPKGGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKTLEHIVLVHYRETQESSPSRSMNSNSGSVSDPSTPWLLSEELDSSANRVYSVDENELSEPSDTTTAMNHEKRLHEINTLEWDELLATDEPFKPAMPKGDRLSYFDQRNQVPMNVTSNLLGDTSSFNNPVGSTASANSNISFTDSTYMQLISGQTNLNVESKESIPITSLDNLLNDGLQSQDSFGRWINEVITESPGAVIDPAIVPSISSIPSSCTDPTLDHHQSSVMEQIFNITDISPAWAFSTEKTKILITGYFHNEYEHLAKSNILVVCGNISVNADFIQPGVYRCLVQPHSRGLVQLYMSLDGHKPISQVLNFEYRAPLLQEPVASEQIQKWEEFQVQMRLAHLLFSTSKSISIMSTKLSPVALNEAKKFAVKTSDISDSWIYLLNSIEENNTPFPQAIEGVLETILRSRLREWLIERVAEGSKKSTDFDVKGQGVIHLCAILGYTWAVHLFDWSGLSINFRDKFGWTALHWASYYGREKMVAVLLSAGAKPNLVTDPSSKNPLGYTAADLASLNGYDGISAYLSEKALVSHFNEMSLAGNVSGSLETSTTTDAIYPDSISEDQMYMKETLTAYRTAADAAARIQTAFREQSLKQRTRAIAFSTPEDEARGIIAAMKIQHAYRNFEVRKQMAAAARIQYRFRTWKIRKDFLNMRRHAIRIQAAFRGFQVRRQYRKIVWSVGIFEKAVLRWRLKRKGLRGLQVAPAEVTEQQETDKVEDFYLASQKQAEERVENAVVRVQAMFRSKKAQEEYRRMKLTYNEAALEYEELSNPDMKLSH 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32211932 32222404 - Sed0012995.1 Sed04g1759 710362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1759 917 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 29 902 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Sed04g1759 917 SUPERFAMILY E set domains 369 456 IPR014756 -
Sed04g1759 917 Gene3D - 509 668 IPR036770 -
Sed04g1759 917 ProSiteProfiles Ankyrin repeat region circular profile. 605 633 - -
Sed04g1759 917 SMART iq_5 769 791 IPR000048 GO:0005515(InterPro)
Sed04g1759 917 SMART iq_5 792 814 IPR000048 GO:0005515(InterPro)
Sed04g1759 917 SMART iq_5 870 892 IPR000048 GO:0005515(InterPro)
Sed04g1759 917 ProSiteProfiles Ankyrin repeat profile. 605 637 IPR002110 GO:0005515(InterPro)
Sed04g1759 917 Pfam CG-1 domain 36 149 IPR005559 GO:0003677(InterPro)
Sed04g1759 917 ProSiteProfiles IQ motif profile. 793 817 - -
Sed04g1759 917 MobiDBLite consensus disorder prediction 150 174 - -
Sed04g1759 917 SUPERFAMILY Ankyrin repeat 569 667 IPR036770 -
Sed04g1759 917 Pfam IPT/TIG domain 370 455 IPR002909 -
Sed04g1759 917 SMART ANK_2a 605 634 IPR002110 GO:0005515(InterPro)
Sed04g1759 917 ProSiteProfiles CG-1 DNA-binding domain profile. 30 156 IPR005559 GO:0003677(InterPro)
Sed04g1759 917 ProSiteProfiles IQ motif profile. 872 900 - -
Sed04g1759 917 Gene3D - 769 817 - -
Sed04g1759 917 SMART CG_1_2 33 151 IPR005559 GO:0003677(InterPro)
Sed04g1759 917 Pfam Ankyrin repeats (3 copies) 577 666 IPR002110 GO:0005515(InterPro)
Sed04g1759 917 Pfam IQ calmodulin-binding motif 794 814 IPR000048 GO:0005515(InterPro)
Sed04g1759 917 ProSiteProfiles IQ motif profile. 770 796 - -
Sed04g1759 917 Gene3D Immunoglobulins 363 459 IPR013783 -
Sed04g1759 917 Coils Coil 884 904 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1759 Sed-Chr4:32211932 Sed13g0919 Sed-Chr13:6879784 1.00E-111 dispersed
Sed04g1759 Sed-Chr4:32211932 Sed07g0085 Sed-Chr7:898735 3.10E-100 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38180 PF12796 Ank_2 1.70E-06 CL0465 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1759 K21596 - csv:101211298 1427.92