Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1759 ATGTCTCTCTCCATGAAAGCTGATGTTCTTCAAGGAACGCTTGTCGGCTCCGAGATTCATGGCTTCCATACATTACAAGATTTGGATGTTACAAACATCAGGGAGGAAGCAAGTGCAAGATGGCTTCGTCCAAATGAAATCAATGCGTTACTTTGTAACTACAAATATTTTGTCATCCATGTCAAGCCAGTGAACTTGCCCAAAGGTGGAACCATTGTACTATTTGACCGCAAGATGCTAAGGAATTTCCGCAAAGATGGACATAATTGGAAGAAAAAAAAAGACGGGAAGACGGTAAAAGAAGCACATGAACACCTAAAAGTTGGCAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTGGATAACCCAACATTTGTTCGTCGGTGTTATTGGCTCCTTGATAAGACTCTTGAGCACATTGTCCTGGTTCATTACCGTGAAACACAAGAGAGTTCTCCCTCCAGATCTATGAATTCAAATTCTGGTTCTGTCTCTGACCCATCGACTCCTTGGCTTTTATCAGAAGAGCTTGATTCTAGTGCTAATCGTGTTTATTCTGTTGATGAAAATGAACTGTCAGAGCCTAGTGACACTACAACAGCCATGAATCATGAAAAACGGCTTCATGAGATCAACACACTTGAGTGGGATGAACTTCTTGCGACAGACGAGCCTTTCAAACCTGCCATGCCTAAAGGAGACAGACTTTCATACTTCGACCAACGGAACCAAGTCCCGATGAATGTGACCAGCAATTTATTGGGGGACACGTCTTCATTTAATAATCCAGTTGGGTCAACTGCGAGTGCCAACAGCAATATCAGTTTTACAGATAGTACCTATATGCAGTTAATAAGTGGTCAAACAAATTTGAATGTAGAGAGTAAGGAATCTATTCCAATTACTTCATTGGACAATTTGTTAAATGATGGATTGCAAAGTCAGGACAGCTTCGGACGATGGATTAATGAAGTCATCACTGAGTCTCCTGGTGCAGTCATTGATCCTGCTATTGTGCCATCCATTTCATCCATTCCCAGTTCCTGTACTGATCCGACATTAGATCACCATCAATCTTCTGTTATGGAGCAAATCTTTAACATAACTGATATCTCACCTGCATGGGCCTTTTCAACAGAAAAAACAAAGATTCTAATCACAGGATATTTTCACAATGAATACGAACATCTGGCCAAGTCCAATATATTGGTTGTGTGTGGTAATATTAGCGTTAATGCTGATTTTATTCAACCTGGAGTTTATCGCTGTCTGGTACAACCACATTCAAGGGGACTAGTACAGTTATACATGAGCTTAGATGGTCATAAACCTATTAGCCAAGTTCTGAATTTTGAGTATCGTGCACCACTTTTACAAGAGCCAGTTGCTTCAGAACAGATTCAAAAGTGGGAAGAGTTTCAAGTTCAGATGCGGCTTGCTCATCTCTTGTTCTCTACATCCAAAAGCATAAGCATCATGTCTACTAAATTGTCACCCGTTGCCCTGAACGAGGCCAAGAAATTTGCTGTCAAAACTTCTGACATTTCTGATAGTTGGATTTATTTGTTAAACTCGATTGAAGAAAATAACACTCCATTTCCACAAGCAATAGAGGGAGTTCTTGAGACCATTTTGAGAAGCAGGTTAAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGTTCAAAGAAAAGCACTGATTTTGATGTAAAAGGTCAAGGAGTAATCCATTTGTGTGCCATATTGGGATATACCTGGGCTGTACATCTATTTGACTGGTCTGGTTTATCAATAAATTTTCGAGATAAATTTGGATGGACAGCTCTTCACTGGGCATCTTATTATGGAAGGGAGAAAATGGTAGCTGTTCTTTTATCAGCAGGGGCGAAGCCAAACTTGGTAACTGATCCCTCATCAAAGAACCCTCTGGGATACACAGCTGCAGATCTTGCATCTTTGAATGGTTATGATGGCATATCTGCTTATCTTTCTGAAAAGGCTTTGGTATCACATTTTAATGAGATGAGCTTGGCTGGAAATGTTAGTGGTTCATTGGAAACTAGTACAACTACCGATGCCATTTACCCAGATAGCATCAGCGAGGATCAGATGTATATGAAAGAAACATTAACAGCTTACCGAACAGCAGCTGATGCGGCAGCACGCATACAAACTGCATTCCGTGAGCAATCTTTAAAGCAAAGGACTCGAGCAATTGCATTCTCGACCCCTGAAGATGAAGCACGTGGTATTATTGCAGCCATGAAAATTCAACATGCCTACCGCAACTTTGAGGTGCGAAAACAAATGGCAGCTGCTGCTCGTATTCAGTACAGATTCCGTACTTGGAAGATCCGCAAAGACTTTCTTAATATGCGTCGTCATGCTATTAGAATTCAAGCTGCATTTAGAGGTTTCCAAGTGCGGAGGCAGTATCGAAAGATCGTTTGGTCGGTAGGAATATTTGAGAAAGCTGTACTGCGTTGGCGTCTTAAGCGAAAAGGGTTACGTGGGCTTCAAGTTGCACCTGCTGAAGTGACAGAACAGCAGGAAACTGACAAAGTAGAGGACTTTTACCTTGCGTCTCAAAAGCAAGCCGAAGAGCGAGTTGAGAATGCTGTTGTCCGGGTGCAGGCTATGTTTCGATCAAAGAAAGCTCAAGAGGAGTATCGTAGGATGAAGTTAACCTACAATGAAGCAGCGCTGGAATATGAAGAGCTTTCAAATCCTGATATGAAATTGAGTCACTGA 2754 41.5 MSLSMKADVLQGTLVGSEIHGFHTLQDLDVTNIREEASARWLRPNEINALLCNYKYFVIHVKPVNLPKGGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKTLEHIVLVHYRETQESSPSRSMNSNSGSVSDPSTPWLLSEELDSSANRVYSVDENELSEPSDTTTAMNHEKRLHEINTLEWDELLATDEPFKPAMPKGDRLSYFDQRNQVPMNVTSNLLGDTSSFNNPVGSTASANSNISFTDSTYMQLISGQTNLNVESKESIPITSLDNLLNDGLQSQDSFGRWINEVITESPGAVIDPAIVPSISSIPSSCTDPTLDHHQSSVMEQIFNITDISPAWAFSTEKTKILITGYFHNEYEHLAKSNILVVCGNISVNADFIQPGVYRCLVQPHSRGLVQLYMSLDGHKPISQVLNFEYRAPLLQEPVASEQIQKWEEFQVQMRLAHLLFSTSKSISIMSTKLSPVALNEAKKFAVKTSDISDSWIYLLNSIEENNTPFPQAIEGVLETILRSRLREWLIERVAEGSKKSTDFDVKGQGVIHLCAILGYTWAVHLFDWSGLSINFRDKFGWTALHWASYYGREKMVAVLLSAGAKPNLVTDPSSKNPLGYTAADLASLNGYDGISAYLSEKALVSHFNEMSLAGNVSGSLETSTTTDAIYPDSISEDQMYMKETLTAYRTAADAAARIQTAFREQSLKQRTRAIAFSTPEDEARGIIAAMKIQHAYRNFEVRKQMAAAARIQYRFRTWKIRKDFLNMRRHAIRIQAAFRGFQVRRQYRKIVWSVGIFEKAVLRWRLKRKGLRGLQVAPAEVTEQQETDKVEDFYLASQKQAEERVENAVVRVQAMFRSKKAQEEYRRMKLTYNEAALEYEELSNPDMKLSH 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32211932 32222404 - Sed0012995.1 Sed04g1759 710362

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1759 917 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 29 902 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Sed04g1759 917 SUPERFAMILY E set domains 369 456 IPR014756 -
Sed04g1759 917 Gene3D - 509 668 IPR036770 -
Sed04g1759 917 ProSiteProfiles Ankyrin repeat region circular profile. 605 633 - -
Sed04g1759 917 SMART iq_5 769 791 IPR000048 GO:0005515(InterPro)
Sed04g1759 917 SMART iq_5 792 814 IPR000048 GO:0005515(InterPro)
Sed04g1759 917 SMART iq_5 870 892 IPR000048 GO:0005515(InterPro)
Sed04g1759 917 ProSiteProfiles Ankyrin repeat profile. 605 637 IPR002110 GO:0005515(InterPro)
Sed04g1759 917 Pfam CG-1 domain 36 149 IPR005559 GO:0003677(InterPro)
Sed04g1759 917 ProSiteProfiles IQ motif profile. 793 817 - -
Sed04g1759 917 MobiDBLite consensus disorder prediction 150 174 - -
Sed04g1759 917 SUPERFAMILY Ankyrin repeat 569 667 IPR036770 -
Sed04g1759 917 Pfam IPT/TIG domain 370 455 IPR002909 -
Sed04g1759 917 SMART ANK_2a 605 634 IPR002110 GO:0005515(InterPro)
Sed04g1759 917 ProSiteProfiles CG-1 DNA-binding domain profile. 30 156 IPR005559 GO:0003677(InterPro)
Sed04g1759 917 ProSiteProfiles IQ motif profile. 872 900 - -
Sed04g1759 917 Gene3D - 769 817 - -
Sed04g1759 917 SMART CG_1_2 33 151 IPR005559 GO:0003677(InterPro)
Sed04g1759 917 Pfam Ankyrin repeats (3 copies) 577 666 IPR002110 GO:0005515(InterPro)
Sed04g1759 917 Pfam IQ calmodulin-binding motif 794 814 IPR000048 GO:0005515(InterPro)
Sed04g1759 917 ProSiteProfiles IQ motif profile. 770 796 - -
Sed04g1759 917 Gene3D Immunoglobulins 363 459 IPR013783 -
Sed04g1759 917 Coils Coil 884 904 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1759 K21596 - - csv:101211298 1427.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1759 Sed-Chr4:32211932 Sed13g0919 Sed-Chr13:6879784 1.00E-111 dispersed
Sed04g1759 Sed-Chr4:32211932 Sed07g0085 Sed-Chr7:898735 3.10E-100 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed06g0965 . 1 1093 CAMTA Transcription Factor Family AT5G64220 52.7 4.8e-275 945.3
Sed06g0966 . 1 1102 CAMTA Transcription Factor Family AT5G64220 52.1 1.3e-272 937.2
Sed10g1851 . 1 1077 CAMTA Transcription Factor Family AT5G64220 52.7 5.2e-269 925.2
Sed07g0085 . 5 952 CAMTA Transcription Factor Family AT1G67310 51.0 2.1e-251 866.7
Sed07g0086 . 5 913 CAMTA Transcription Factor Family AT1G67310 50.4 9.2e-247 851.3
Sed09g0385 . 6 920 CAMTA Transcription Factor Family AT1G67310 50.7 3.3e-244 842.8
Sed04g1759 . 35 910 CAMTA Transcription Factor Family AT3G16940 52.7 7.4e-247 851.3
Sed04g1759 . 7 629 CAMTA Transcription Factor Family AT4G16150 53.1 4.1e-193 672.9
Sed06g0965 . 1 1093 CAMTA Transcription Factor Family AT5G64220 52.7 4.8e-275 945.3
Sed06g0966 . 1 1102 CAMTA Transcription Factor Family AT5G64220 52.1 1.3e-272 937.2
Sed10g1851 . 1 1077 CAMTA Transcription Factor Family AT5G64220 52.7 5.2e-269 925.2
Sed07g0085 . 5 952 CAMTA Transcription Factor Family AT1G67310 51.0 2.1e-251 866.7
Sed07g0086 . 5 913 CAMTA Transcription Factor Family AT1G67310 50.4 9.2e-247 851.3
Sed09g0385 . 6 920 CAMTA Transcription Factor Family AT1G67310 50.7 3.3e-244 842.8
Sed04g1759 . 7 629 CAMTA Transcription Factor Family AT4G16150 53.1 4.1e-193 672.9
Sed04g1759 . 35 910 CAMTA Transcription Factor Family AT3G16940 52.7 7.4e-247 851.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38180 PF12796 Ank_2 1.70E-06 CL0465 Sed TF