Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1761 ATGTCGAATAATGGCACGACATATCGTCACAAGGAAGGGCCGGTGTGGTTGCGTCAAAAGCGAATTTCGATTGCTAGTTTCCGTCTTCAATCGAAGATGAAGATCATCATCGACAGAGAAGCGCGGAAAGTTGCGGTTGATAATCGAATTCCCCTCCGGAATTACTATCGGATCGCCGATAATCTCTTAAAACAGGCCTATATTTATCGGGAGGAGAATAATGTTGTGGATTTGTTCATTATGCTTCTTAGGTTTTCAAGCTTGGTTTCTGAAACTATACCACGGCATCGTGATTACTTAGCTTTTTTCCCGAAGGAAAAGATATTTTATAAAAAGAAACTATTGAGTGTAGTAGAAGAACTTGAGTCCTTGAAGCCTGAATTTGATCGCCGAGCAAATGGACTGGAGAAAGTGTATGGAGAGCCTCGTCTTCCTCCACCTGACAAACAGGAAAGACCCTATGTGAATGGAAATTATTCATTGGTCTTGGATCAAAAGCAGCCTGCAAATTTTAAACCACAATCTTCATGGAGGTATAATGATGACCGAGGTCAAGTTTCACAATCAAGTACCTCAAGGGTCGAGAATAAGTTTTCAAATCTGTCTCTTAATGTATCACTTCCCAAACCCGAAACTTTGTCTAGACATTCTATTTTGGGACCCAGTGGTCTTCAGGGCCAATGGAAGGGACCGAGTGTAGATAAGATTCACTATCCAAGAAATCAGGAGTTTACTCTTGAAGATTCAAGACTGAATACAGTTGAACAGTATGATCCAGTGGCACAAAAAGATAGTGGTCCAGGAGGTGCTATGTCCATGATGGAGTCAGTACTCTCGCTAGACGATGGTCTTTGGCCTCATCCTGCTGATATGTCTACTTCTCCATTGATAACAGAAATAAGGGAGGATCCTTTCCCATTGGTCAAACAGCCTTCCCCTCCTCCTGTTCTTGCTAAGGTTCAGCAGGAATATGCGACAATTCCTCCATCTAAAGTTGCAGATCCAAGGCCTGGAGTGGCAAAACAATCGCAGGATGGACCTGACTCATTCCAACGTTTACACATTCCAGTGAAAATGCTGGATGATTTCTTGAGATTGGCTCGAAAAAATACAAATAATAATCTGGAGACTTGTGGTGTTTTAGCTGGCTCTCTGAAAAACAGGGTTTTTTACATATCTACGCTCATAATCCCAAAGCAAGAATCAACATCAGATTCCTGCCAAACGTTGAGTGAAGAGGAAATATTTGAAGTTCAAGACAGATTATCACTTTTCCCTCTTGGTTGGATCCATACACATCCATCACAAACTTGTTTCATGTCATCTGTGGATTTGCACACGCATTACTCGTATCAGGTAAGATTACAATTCTACTCATTTTTATTCTTTTGCCTCTTTCTAAAGAAATTTTGGCTTCTTCAGATTATGCTACCGGAAGCGATTGCAATCGTCATGGCTCCTACCGATGAATCAAGTCCATATGGAATATTTCATCTGTCCGATCCAGGCGGCGTATCAGTCATTCGAAACTGCCAACAGCGTGGATTTCATCCTCACGAGGAGCCTGAAGATGGTAGTCCACTCTATGAGCACTGCTCTCATGTTTTAATGAATCCTAATGCAAAGTTCGATGTTATCGACCTGAGGTAA 1650 41.82 MSNNGTTYRHKEGPVWLRQKRISIASFRLQSKMKIIIDREARKVAVDNRIPLRNYYRIADNLLKQAYIYREENNVVDLFIMLLRFSSLVSETIPRHRDYLAFFPKEKIFYKKKLLSVVEELESLKPEFDRRANGLEKVYGEPRLPPPDKQERPYVNGNYSLVLDQKQPANFKPQSSWRYNDDRGQVSQSSTSRVENKFSNLSLNVSLPKPETLSRHSILGPSGLQGQWKGPSVDKIHYPRNQEFTLEDSRLNTVEQYDPVAQKDSGPGGAMSMMESVLSLDDGLWPHPADMSTSPLITEIREDPFPLVKQPSPPPVLAKVQQEYATIPPSKVADPRPGVAKQSQDGPDSFQRLHIPVKMLDDFLRLARKNTNNNLETCGVLAGSLKNRVFYISTLIIPKQESTSDSCQTLSEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQVRLQFYSFLFFCLFLKKFWLLQIMLPEAIAIVMAPTDESSPYGIFHLSDPGGVSVIRNCQQRGFHPHEEPEDGSPLYEHCSHVLMNPNAKFDVIDLR 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32241170 32246960 + Sed0012111.1 Sed04g1761 710364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1761 549 SMART pad1_6 352 485 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Sed04g1761 549 MobiDBLite consensus disorder prediction 329 349 - -
Sed04g1761 549 MobiDBLite consensus disorder prediction 171 193 - -
Sed04g1761 549 CDD MPN_AMSH_like 353 549 IPR044098 GO:0016579(InterPro)|GO:0061578(InterPro)|GO:0070536(InterPro)|GO:0140492(InterPro)
Sed04g1761 549 Gene3D Cytidine Deaminase, domain 2 467 549 - -
Sed04g1761 549 Gene3D Cytidine Deaminase, domain 2 338 461 - -
Sed04g1761 549 ProSiteProfiles MPN domain profile. 353 503 IPR037518 -
Sed04g1761 549 PANTHER AMSH-LIKE PROTEASE 34 549 - GO:0005768(PANTHER)|GO:0016020(PANTHER)|GO:0070536(PANTHER)|GO:0071108(PANTHER)
Sed04g1761 549 SUPERFAMILY JAB1/MPN domain 352 502 - -
Sed04g1761 549 Pfam USP8 dimerisation domain 30 129 IPR015063 -
Sed04g1761 549 Gene3D - 26 144 - -
Sed04g1761 549 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 349 452 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1761 K11866 - - csv:101209152 865.144
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1726 Sed-Chr1:12568431 Sed04g1761 Sed-Chr4:32241170 5.20E-118 dispersed
Sed04g1761 Sed-Chr4:32241170 Sed08g2186 Sed-Chr8:35770798 4.70E-120 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g103 Blo01g00056 . . Bda08g00309 . . . Bma05g01019 Cmo08g01232 Cmo17g00347 . . . . . . . . . . . . . . Cla06g00441 Cam06g0468 Cec06g0474 . Clacu06g0455 Cmu06g0456 Cre06g1231 . . Cone7ag0112 Cone4ag0116 . Csa06g01758 Chy11g01553 . . . . . Bpe05g00819 . . . Sed04g1761 . . Cma08g01262 Cma17g00357 Car08g01132 Car17g00328 Cpe12g00309 Cpe17g00053 Bhi12g01907 Tan06g2735 Cmetu11g2266 Lac11g0914 Hepe03g0061 . Lcy12g0785 . . . . . . . Lsi09g01472 . . Cme11g02064
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008620 2 1 1 1 1 1 2 0 1 1 1 1 1 1 0 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 34