Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1768 ATGGATCTGAGCCAAATGAGTTCAATTTCTGGTAGAAAATCCCCTGAAATGGTTTCAGATCAGTTCCCAATAGGGCTTCGAGTTCTGGTTGTGGATGATGATCCAACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATACTGTGACGAAATGTAATCGGGCCGAGATCGCGTTGTCCATGCTTCGTGAGAACAAAAACGGGTTCGATATCGTCTTAAGCGACGTGCATATGCCAGACATGGATGGATTCAAACTTCTAGAGCAAGTTGGGTTGGAGATGGATTTGCCTGTGATCATGATGTCAGCAGATGATGGGAAGAATGTTGTAATGAAGGGAGTGATTCATGGTGCTTGCGATTACCTGATCAAACCCGTTCGAATCGAAGCGCTTAGGAACATATGGCAACATGTACTTCGGAAGAGGAAGACGGAGTGGAAGGATATAGATCAATCTGGGAGCGTTGAGGATGGAGATCGAGAGCATAATCCATCCGAAGGTGCAAATTATTCATCTTCGGCGTATGAAGGAAGTTGGAACAGCTCGAAGAGGCGGAGGGAAACAGAAGACGAGGCTGAGGAGAGGGACGATACATCGACTTTAAAGAAGCCTAGGGTCGTATGGTCAGTTGAGCTCCATCAACAATTTGTCGCTGCGGTTAATCAGCTAGGCATCGACAAGGCTGTTCCTAAAAGGATATTGGAGTTGATGAACGTTCCGGGACTTACTCGAGAAAATGTTGCGAGTCACCTTCAGAAATATCGCTTATATCTTAGAAGGCTTAGTGGAGTATCATCCTCGCACTCACACCCATGTAATTCTTTTATGAACCCTCAAGACCAACCTTTTGGGCCAATGGCCTCATTCAATGGGATGGATCTTCAGACGCTTTCCATCCCCGGGCATCTCTCGCCTCAAAGTCTTTCCGCGCTCCAAGCAACCGGTCTTCGTAGGCCTACTACAGCTAAATCCAGCATATCCATGGGCCTTGTTGATCAGAACATATTCAGCTTTGAAAATCCAAAATTGAGGTTTGTTGAGGACCAAACACAACACCTAAATAACAGTAAACAAGTAAACTTATTTCATGGGATTCCCACAAAAATGGAGCCAAAGCAGCTTGCCAATTTGCACCCTTCTATTCAGACTCAAGGGAGCATAAACATGCCACTCAATATCAAAACTGAACATGGTGGAACTCAACTAATGCATTTGTCTCAACACCAAAATGGAGGACAGACTCTACATAACTCCCCTGTTAGCCACTTACCTAGAATTTCATCGACAACGAGGAACCCGATTACATCAGGTAGCATTGCGAGGGGAAACGGACCCGGATACGATCCAGCTTTCCCGACATCATTGATGGTGAACTATCCAATGAACCATCCCACAGAATTGTCAAACAATTTTTCTCAGAGTGATTCAACAGTATCTACCCTGACCTGTAAAGAGGTGTTTCAAGAAGAGATTAGTTTAGATCTAAAAGCGTCGGCGGAACTAATGTCGAGTTACGATGTTTTCGATGACTTTCATTTGCAAAAACCCCATGACTGGAATTCTCAAAATGTAAGCAGCTTGGCCTTTGGTACTTCTCACCATGGGAACTTCATACAGGATAGCTTTGATGTCTCACCCTCAACTTTGTTTCATCATGGTTTTTCTTCAAGCCAAATAAATGCACAAACTGAAAGTTCATCCGTCACGGATGCAACTCAACACGATAACGCGCAAAACTCGCTTCTCAATGCCGTGGAGGTCAAACCTCAGAGAATCACTGATGCAAGCTATCAAACTGACCTCTTATCTGAGAACTTTGGCCAGGATGAACTTCTTTGTGTCTTCCTCAAACAACAAAAACAAGGAGACAACGGATCGGTTGACTATAGCGGGTTCAAAGCGGAGAATATTTGCGTTTAA 1929 44.32 MDLSQMSSISGRKSPEMVSDQFPIGLRVLVVDDDPTCLRILEKMLQNCCYTVTKCNRAEIALSMLRENKNGFDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVLRKRKTEWKDIDQSGSVEDGDREHNPSEGANYSSSAYEGSWNSSKRRRETEDEAEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKYRLYLRRLSGVSSSHSHPCNSFMNPQDQPFGPMASFNGMDLQTLSIPGHLSPQSLSALQATGLRRPTTAKSSISMGLVDQNIFSFENPKLRFVEDQTQHLNNSKQVNLFHGIPTKMEPKQLANLHPSIQTQGSINMPLNIKTEHGGTQLMHLSQHQNGGQTLHNSPVSHLPRISSTTRNPITSGSIARGNGPGYDPAFPTSLMVNYPMNHPTELSNNFSQSDSTVSTLTCKEVFQEEISLDLKASAELMSSYDVFDDFHLQKPHDWNSQNVSSLAFGTSHHGNFIQDSFDVSPSTLFHHGFSSSQINAQTESSSVTDATQHDNAQNSLLNAVEVKPQRITDASYQTDLLSENFGQDELLCVFLKQQKQGDNGSVDYSGFKAENICV 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32307521 32311493 - Sed0021555.1 Sed04g1768 710371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1768 642 NCBIfam myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677(InterPro)
Sed04g1768 642 MobiDBLite consensus disorder prediction 152 203 - -
Sed04g1768 642 MobiDBLite consensus disorder prediction 168 182 - -
Sed04g1768 642 MobiDBLite consensus disorder prediction 422 449 - -
Sed04g1768 642 FunFam Two-component response regulator 202 265 - -
Sed04g1768 642 FunFam Two-component response regulator 26 163 - -
Sed04g1768 642 MobiDBLite consensus disorder prediction 183 203 - -
Sed04g1768 642 Pfam Response regulator receiver domain 28 136 IPR001789 GO:0000160(InterPro)
Sed04g1768 642 PIRSF RR_ARR_type-B 4 633 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Sed04g1768 642 MobiDBLite consensus disorder prediction 422 442 - -
Sed04g1768 642 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 373 IPR045279 GO:0009736(InterPro)
Sed04g1768 642 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 262 IPR017930 -
Sed04g1768 642 CDD REC_typeB_ARR-like 28 142 - -
Sed04g1768 642 Gene3D - 26 158 - -
Sed04g1768 642 MobiDBLite consensus disorder prediction 152 167 - -
Sed04g1768 642 Pfam Myb-like DNA-binding domain 208 258 IPR001005 -
Sed04g1768 642 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Sed04g1768 642 SMART REC_2 26 138 IPR001789 GO:0000160(InterPro)
Sed04g1768 642 SUPERFAMILY CheY-like 25 149 IPR011006 -
Sed04g1768 642 Gene3D - 203 265 - -
Sed04g1768 642 ProSiteProfiles Response regulatory domain profile. 27 142 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2639 Sed-Chr3:42303883 Sed04g1768 Sed-Chr4:32307521 5.60E-79 dispersed
Sed04g1768 Sed-Chr4:32307521 Sed12g0795 Sed-Chr12:4870388 2.20E-145 dispersed
Sed12g0794 Sed-Chr12:4870388 Sed04g1768 Sed-Chr4:32307521 4.70E-175 wgd
Sed02g1151 Sed-Chr2:48668430 Sed04g1768 Sed-Chr4:32307521 2.60E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38184 PF00072 Response_reg 5.80E-22 CL0304 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1768 K14491 - csv:101210138 1013.45