Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1773 ATGGTGAGAAATATGTCGATAAAGAAAAAGAAAAATGGCGAAGACGGCGGCAAATTAGAAGCGGCTCGAGAAATGGCGAAAGAGGCGAAAAGGAACAAATCGATGATTTGTTTATCTGGAAGCGTTAAAACAAGCAAGTTTGATGTTGTGTCCTCTGTTTGCTCCAAGAGAGGAAATAAAGGAACTAATCAAGATTCCTTGGTTGTTTGGGAGGACTACGGTTGCCAAGAAAACATGGTTTTCTGTGGGATATTTGATGGGCATGGGCCTTGGGGCCACATGGTTAGCAAACAGGTCAGAAAGTCACTGCCTGCCCAATTGCTTACCAATTGGCACCAAACCCTTTCAATGGAAGCCGATCAAAACCTTCTTCCTCCCAAAATATGGAAGCAATCTTGCTTAAAAACATACGCCGCCATTGATGAGGAGCTTAAACAACACCCTCGCATTGATTCCTTTTACAGTGGCACAACGGCTTTGACTGTGGTTAAACAGGGCCGACATCTTGTTGTTGCAAACGCTGGCGATTCACGAGCTGTGTTGGGCGTAACTTCTGATGATGGCAGCTTGAAAGCAGTTCAACTCTCAGTTGATTTCAAACCTAATTTGCCTGAGGAGGAAGAGAGAATAAAAGAATCGAAAGGGCGGGTGATGTGCTTAAAAGACGAACCAGGAGTGTACAGAGTGTGGAGTCCAAACTCGGGGAGTCCAGGTTTGGCGATTTCCAGAGCATTTGGAGATTACTGCACCAAACAGTACGGACTCATTTCTGTGCCTGATATAACCCACCGAATCCTTACTCCTCAAGATCACTTTCTCATTCTTGCTACTGATGGGGTGTGGGACGTCATGTCGAATCAAGAAGCGGTTCACATAGTTTGTTCAACGACAAATAGGGAAATGTCGGCCAAAAGGCTGGTGGATTGTGCTGCTGTCGCTTGGAAATCCAAGAAACGAGGCTTTGCAAGGGACGACATATCGGCCATTTGCCTCTTTTTTCATGATTCACCCTCACAAAATCATTGA 1026 45.22 MVRNMSIKKKKNGEDGGKLEAAREMAKEAKRNKSMICLSGSVKTSKFDVVSSVCSKRGNKGTNQDSLVVWEDYGCQENMVFCGIFDGHGPWGHMVSKQVRKSLPAQLLTNWHQTLSMEADQNLLPPKIWKQSCLKTYAAIDEELKQHPRIDSFYSGTTALTVVKQGRHLVVANAGDSRAVLGVTSDDGSLKAVQLSVDFKPNLPEEEERIKESKGRVMCLKDEPGVYRVWSPNSGSPGLAISRAFGDYCTKQYGLISVPDITHRILTPQDHFLILATDGVWDVMSNQEAVHIVCSTTNREMSAKRLVDCAAVAWKSKKRGFARDDISAICLFFHDSPSQNH 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32365050 32367945 - Sed0003719.1 Sed04g1773 710376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1773 341 MobiDBLite consensus disorder prediction 1 21 - -
Sed04g1773 341 MobiDBLite consensus disorder prediction 7 21 - -
Sed04g1773 341 Coils Coil 203 223 - -
Sed04g1773 341 Gene3D - 33 336 IPR036457 -
Sed04g1773 341 CDD PP2Cc 49 333 IPR001932 -
Sed04g1773 341 ProSiteProfiles PPM-type phosphatase domain profile. 50 333 IPR001932 -
Sed04g1773 341 PANTHER PROTEIN PHOSPHATASE 32 332 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed04g1773 341 Pfam Protein phosphatase 2C 53 310 IPR001932 -
Sed04g1773 341 SMART PP2C_4 40 331 IPR001932 -
Sed04g1773 341 SUPERFAMILY PP2C-like 42 335 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0430 Sed-Chr4:3145711 Sed04g1773 Sed-Chr4:32365050 2.50E-101 dispersed
Sed04g1773 Sed-Chr4:32365050 Sed11g1235 Sed-Chr11:28150901 5.50E-87 dispersed
Sed04g1773 Sed-Chr4:32365050 Sed11g0391 Sed-Chr11:3739441 1.20E-118 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1773 - - - 0.0