Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1775 ATGGGATCGGAGCAGTTGATGGCCGGCGGCGGGCCGCGATACGCCCAAATGCAGCAGGAGCCGCCGACGGCTTCGACGACGTCGTTTTTCTCGTTCCACCACGATGCTCCGGAGCCGACGAGGATCTTCGATGAGTTGCCGGAGGCTACAATTATCTCCGTCTCTCGCCCTGATGCCGGCGATATCAGTCCGATGCTTCTTTCTTACACAATCGAGTGCCAGTACAAGCAGTTTAAATGGCGCATGTTGAAGAAAGCTTCCCATGTAATCTATTTGCATTTCGCATTAAAGAAACGGGCATTCATTGAGGAAATTCACGAGAAGCAAGAACAGGTTAAAGAATGGCTTCAAAATCTAGGAATAGGAGAACACACAACTGGGCTCCAAGATGAGGATGGACCAGATGAGGAGGCCGATCCTCTTGAAAGCTCTAAAAATAGGGATGTTCCATCCAGTGCTGCCCTACCTATCATTCGGCCTGCCTTAGGAAGACAAAATTCTATGTCTGATAGAGCTAAGACTGCAATGCAAGGGTATTTGAATCACTTCTTAAGTAACATGGATATTGTCAACTCTCGAGAGGTTTGCAGGTTTTTGGAGGTCTCTAAGTTATCATTTTCACCGGAATATGGTCCAAAGTTGAAAGAGGATTATGTCATGGTGAAGCATCTACCTAAAATTGCAAGGGAAGACGACTCTAGGAAATGTTGTCTATGCTCATGGTTTGGTTGTTGTAATGACAATTGGCAAAAGGTGTGGGCTGTATTAAAACCTGGATTTTTGGCCTTGTTGGGAGATCCTTTTGATACTCAACCAATGGATATTATAGTTTTTGACGTGCTACCTACTTCTGATGCCAATGGAGATGGACGAGTATCTTTGGCTAAGGAAATTAAAGAGAGAAATCCATTACGACATTCTTTTAAGGTGACATGTGGAAATAGGAATATTAGGATTAGAGCAAAGAGCGGATCCAAGGTTAAAGACTGGGTTGCTGCAATTAATGATGCTGGACTGAGGCCTCCTGAGGGATGGTGTCATCCTCACCGTTTTGGTTCTTTTGCTCCTCCAAGGGGTTTGACTGATGATGGCAGTAAGGCTCAGTGGTTCATTGATGGCCAAGCAGCTTTTGAAGCTATTGCCTTTTCCATTGAACAAGCAAAATCAGAGATTTTCATTTGTGGCTGGTGGCTTTGCCCAGAATTGTATCTGCAGCGTCCTTTTATTTCAAATGCTTCATCTCGTCTTGATGCTTTACTTGAAGCAAAAGCTAGGGAAGGGGTTCAGATATACATTCTTCTCTACAAAGAGGTTGCCCTTGCTTTAAAAATTAACAGTGTTTATAGCAAGAAAAAACTTCTCAGCATCCATGAAAATGTGAGAGTATTACGCTACCCCGACCACTTCTCCAGTGGTGTGTACTTGTGGTCCCACCATGAAAAACTTGTCATTGTCGATTATCATATTTGCTTTATTGGAGGTCTGGATTTATGCTTTGGTCGTTATGATACACCAGAACATAAAGTTGGGGATTGTCCTCCTTCAGTATGGCCCGGGAAGGACTACTATAATCCAAGGGAATCTGAGCCAAATTCTTGGGAAGATACCATGAAAGATGAGTTGGATCGTGGAAAATATCCTCGCATGCCTTGGCATGATGTCCACTGTGCACTTTCAGGACCACCTTGTCGAGACATAGCCAGACATTTTGTCCAACGCTGGAATTATGCTAAGAGAAATAAAGCCCCAAATGAGCAGGCAATTCCATTACTTATGCCTCAACAACATATGGTCATTCCTCATTACTTGTGGAATAGTCGAGAGTTAGAGGCTGAAAAGAAGAGTATTGAGGATTCTAAAGGATTATCAGTGGAGGATCCATTTTCTCGTGGATCGTCTTTTCATGATATTCCGTTGCTTCTGCCTCAAGAAGCTGATGAACAGGATACTCAAAATGAAGGTCTAAAATTAAATGGACTGGAGCCCATTGCTAACCCCCTTGATCAGACGTGTAAGATCAACGGTGGTCACTCGTTCTCTCTTAGGAAGATCAAAGTTGAACCCATAGGACCAGATATGCCTCTGAAAGGCTTTGTTGATGATCTAGACTATTTGGATTCCTATGGAAAGTTGTATGGAGATGGGAAAACACATCATCGTGTTAAAAGTTCGGATTTGGAGTGGTGGGAAACACAAGATAGGGGACATCATGGGGGCTTCACAGATGAATCGGGACAAGTTGGTCCATGTGTTTCATGTCGTTGCCAGGTCATTAGAAGTGTTAGTCAGTGGTCTGCTGGGACGAGCCAAACTGAAGAGAGCATTCACATTGCATATTGTTCTCTTATTGAGAAAGCAGAGCATTTTATTTATATTGAGAATCAATTTTTCATATCAGGCCTTGCAGGAGATGACTTAATACGGAATCGTGTGTTAGAATCCTTATATCGTCGCATAATGAGAGCTTATCGTGAAAAGAAGACTTTTAGGGTTATTATTGTCATACCTCTCTTACCTGGATTTCAGGGGGGTCTGGATGACAGTGGTGCAGCATCAGTTAGAGCTATAATGCATTGGCAGTATCGTACCATATGTCGAGGGCCGAATTCGATATTGCATAATCTTTATGAGCTTCTCGGTTCAAAAGTTCACGATTATATATCATTCTATGGCCTCAGGTCTAATGGTAAACTCTTTGATGGTGGCCCCGTGGCTACAAGCCAGGTGTACGTGCATAGTAAAATTATGATCATTGATGACTCGATTGCTTTAATTGGATCGGCTAACATTAACGACAGGAGTTTACTTGGTTCTAGGGATTCTGAGATTGCGATTGTTATTGAAGATAACGAACTTATCAATTCATTTATGGGAGGACAACCATGGAAAGCAGGAAAATTTTGTTGCAGTCTTCGTCTCTCTCTTTGGGCAGAACATCTCGGTCTTCGTCCTGGACAGATCAATCACATAATTGACCCAGTTGCTGATTCAACCTACAAGGATACATGGATGGGAACTGCTAAGACGAACACGGCAATATACCAAGATGTTTTTTCTTGCCTACCAAACGACCTCATAATTTCCAGAGCCGGATTGAGACAAAGCGTCGCATTCTGGAAAGAAAGACTGGGGCACACCACAATAGATCTAGGAATTGCACCCGAGAAGCTCGAGTTTTACAAAAATGGAGAAATTGAAAGGATTGATCCAATGGAGAGATTAAGCTCGGTGAAGGGGCATCTTGTTTCCTTTCCATTGGAATTCCTCAGCAAAGAAGATTTAAGACCTGTGTTCAATGAGAGTGAGTACTATGCATCCCAAGTTTTTCATTAA 3333 42.9 MGSEQLMAGGGPRYAQMQQEPPTASTTSFFSFHHDAPEPTRIFDELPEATIISVSRPDAGDISPMLLSYTIECQYKQFKWRMLKKASHVIYLHFALKKRAFIEEIHEKQEQVKEWLQNLGIGEHTTGLQDEDGPDEEADPLESSKNRDVPSSAALPIIRPALGRQNSMSDRAKTAMQGYLNHFLSNMDIVNSREVCRFLEVSKLSFSPEYGPKLKEDYVMVKHLPKIAREDDSRKCCLCSWFGCCNDNWQKVWAVLKPGFLALLGDPFDTQPMDIIVFDVLPTSDANGDGRVSLAKEIKERNPLRHSFKVTCGNRNIRIRAKSGSKVKDWVAAINDAGLRPPEGWCHPHRFGSFAPPRGLTDDGSKAQWFIDGQAAFEAIAFSIEQAKSEIFICGWWLCPELYLQRPFISNASSRLDALLEAKAREGVQIYILLYKEVALALKINSVYSKKKLLSIHENVRVLRYPDHFSSGVYLWSHHEKLVIVDYHICFIGGLDLCFGRYDTPEHKVGDCPPSVWPGKDYYNPRESEPNSWEDTMKDELDRGKYPRMPWHDVHCALSGPPCRDIARHFVQRWNYAKRNKAPNEQAIPLLMPQQHMVIPHYLWNSRELEAEKKSIEDSKGLSVEDPFSRGSSFHDIPLLLPQEADEQDTQNEGLKLNGLEPIANPLDQTCKINGGHSFSLRKIKVEPIGPDMPLKGFVDDLDYLDSYGKLYGDGKTHHRVKSSDLEWWETQDRGHHGGFTDESGQVGPCVSCRCQVIRSVSQWSAGTSQTEESIHIAYCSLIEKAEHFIYIENQFFISGLAGDDLIRNRVLESLYRRIMRAYREKKTFRVIIVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGPNSILHNLYELLGSKVHDYISFYGLRSNGKLFDGGPVATSQVYVHSKIMIIDDSIALIGSANINDRSLLGSRDSEIAIVIEDNELINSFMGGQPWKAGKFCCSLRLSLWAEHLGLRPGQINHIIDPVADSTYKDTWMGTAKTNTAIYQDVFSCLPNDLIISRAGLRQSVAFWKERLGHTTIDLGIAPEKLEFYKNGEIERIDPMERLSSVKGHLVSFPLEFLSKEDLRPVFNESEYYASQVFH 1110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32375482 32385055 - Sed0007898.1 Sed04g1775 710378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1775 1110 Coils Coil 98 118 - -
Sed04g1775 1110 SUPERFAMILY Phospholipase D/nuclease 747 957 - -
Sed04g1775 1110 ProSiteProfiles PH domain profile. 248 339 IPR001849 -
Sed04g1775 1110 PIRSF PLD_euk 54 620 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
Sed04g1775 1110 PIRSF PLD_euk 684 1110 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
Sed04g1775 1110 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 907 934 IPR001736 GO:0003824(InterPro)
Sed04g1775 1110 CDD PH_PLD 190 337 - -
Sed04g1775 1110 FunFam Phospholipase 741 961 - -
Sed04g1775 1110 SMART pld_4 474 501 IPR001736 GO:0003824(InterPro)
Sed04g1775 1110 SMART pld_4 907 934 IPR001736 GO:0003824(InterPro)
Sed04g1775 1110 Gene3D - 239 337 IPR011993 -
Sed04g1775 1110 PANTHER PHOSPHOLIPASE D 171 1091 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Sed04g1775 1110 Pfam PLD-like domain 909 955 IPR025202 -
Sed04g1775 1110 SUPERFAMILY PH domain-like 246 337 - -
Sed04g1775 1110 Gene3D Endonuclease Chain A 739 964 - -
Sed04g1775 1110 Gene3D Endonuclease Chain A 360 605 - -
Sed04g1775 1110 MobiDBLite consensus disorder prediction 1 27 - -
Sed04g1775 1110 CDD PLDc_vPLD1_2_yPLD_like_2 767 951 - -
Sed04g1775 1110 SMART PH_update 213 341 IPR001849 -
Sed04g1775 1110 CDD PLDc_vPLD1_2_yPLD_like_1 367 512 - -
Sed04g1775 1110 Pfam Phospholipase D Active site motif 474 501 IPR001736 GO:0003824(InterPro)
Sed04g1775 1110 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 474 501 IPR001736 GO:0003824(InterPro)
Sed04g1775 1110 SUPERFAMILY Phospholipase D/nuclease 319 594 - -
Sed04g1775 1110 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1936 Sed-Chr3:13444452 Sed04g1775 Sed-Chr4:32375482 0.00E+00 dispersed
Sed04g1775 Sed-Chr4:32375482 Sed14g1225 Sed-Chr14:21447685 1.00E-41 dispersed
Sed04g1775 Sed-Chr4:32375482 Sed09g0264 Sed-Chr9:2120718 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1775 K01115 - csv:101211856 2087.38