Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1778 ATGACGAATGCAGAAGGCGACCAAAAAAAGAAGAAAATCGCCATAGTGAGCGTGTCGTCTCTAATCCTGGTGGCAATGGTGGTTGCCGTTACCGTTGGGGTCAACAAGAACCCCGCGAAAGATGACGGTAAAGATGGTAACGGCGAGGCGAAGCCGGAAATAACGGCATCGTCGAAAGCAATCAAGGCGATTTGTCAACCGACGGATTACAAGGAAACATGCGAGAAGAGTTTAATGTCGGAAGCTGGCAACACAACGGATCCGAAAGAGCTAGCGAAAGTCGGGTTAAGAGTCGCCACGGAGCAGCTCAACTCGGCGATCCGAAACTCCACCACGCTTCAAGAACTCGCCAAGGATCCAATGGCCAACCAAGCCCTCCAGAACTGCCGCGAGCTTCTCGAATACGCCATCGACGATCTAAACGACTCGTTTGCCCGAATTGGCAGCTTCGAAATGTCGAAGCTTGACGAATTCGTCAACGATATAAAGATCTGGCTCAGTGCTGCCCTCACGTACGAACAAACATGCTTGGACGGATTTGAAAACACCACGGGGGATTCGGGTGAGAGAATGAAGGAATTTTTGAAGTCCGGTAAAGAAATGACGAGCAATGGGCTTGTGATCCTAGGTGGTTCGGGGATGAAGGTGGGGCGACGACGTCTGATGGTAAACTATGAGGAAATCCCATCGTGGGTGAGCGAAGGGAAGAGGCAGCTGATGCAGGCAGGAACGGCCTCTTTAAAGCCAGATGTGGTGGTGGCCAAAGATGGGAGTGGAAAATACAAGACCATTACGGCAGCTTTGGCTGAGGTACCAAAGAAGAGTAATACAACGTTCGTTATTTATGTGAAAGCTGGAATTTATAAGGAAACTGTTATAGTTCCTAAGGCTTTGAGACATGTTACCATGTTTGGCGATGGTCCAACTAAAACGGTCATCACTGGTAATTTAAACTATGTGGATGGCGTTCAAACATTCAAAACGGCTACCTTTGCTGCGATCGGGCCAAATTTCTTGGGGAAAGACATGGGATTCGTGAACAGCGCGGGAGCAATAAAGCACCAAGCCGTGGCACTACGAGTTCAATCCGACCGGTCGGTCTTTCACAATTGTTACGTGGACGGCTACCAAGACACTCTATACACCCACGCCCATCGCCAGTTCTTCCGCGACTGTAAGATCAGCGGCACCATCGACTTCGTGTTCGGGAATGCGGCCGCGGTGTTCCAAAACTGCGAGCTCATCGTCCGCAAGCCCCTAGAGAATCAAAACTGCATCGTGACGGCTCAGGGGCGGCTCGAGAAACGGGAGCCCACCGGGCTGGTATTCCAAGGCTGCCACTTCATGGGCGACCGGGGTTACCTGCCCTTCAAAGCCGAGAACAAAGCCTACCTGGGGCGCCCCTGGAAGCAGTATTCTCGGACGATTATAATGGGCTCCCAAATCGACGATTTAATCCAGCCCCAGGGTTGGTTGCCTTGGACCGGCACCTTTGCGCTTGACACCTTGTTTTACTCCGAGTTCAATAACAAAGGACCCGGCGCTGACCTCAGCAAGAGGGTGACGTGGCCAGGAATTAAAAAGATTACGCCCCAAGTCGCCGAGGGATTCACTCCTCGGAAATTTATGGACGGCGATGCTTGGATTAAGCCCACCGGAGTTCCCTACGCTTCGGGAATGATGTAA 1686 51.6 MTNAEGDQKKKKIAIVSVSSLILVAMVVAVTVGVNKNPAKDDGKDGNGEAKPEITASSKAIKAICQPTDYKETCEKSLMSEAGNTTDPKELAKVGLRVATEQLNSAIRNSTTLQELAKDPMANQALQNCRELLEYAIDDLNDSFARIGSFEMSKLDEFVNDIKIWLSAALTYEQTCLDGFENTTGDSGERMKEFLKSGKEMTSNGLVILGGSGMKVGRRRLMVNYEEIPSWVSEGKRQLMQAGTASLKPDVVVAKDGSGKYKTITAALAEVPKKSNTTFVIYVKAGIYKETVIVPKALRHVTMFGDGPTKTVITGNLNYVDGVQTFKTATFAAIGPNFLGKDMGFVNSAGAIKHQAVALRVQSDRSVFHNCYVDGYQDTLYTHAHRQFFRDCKISGTIDFVFGNAAAVFQNCELIVRKPLENQNCIVTAQGRLEKREPTGLVFQGCHFMGDRGYLPFKAENKAYLGRPWKQYSRTIIMGSQIDDLIQPQGWLPWTGTFALDTLFYSEFNNKGPGADLSKRVTWPGIKKITPQVAEGFTPRKFMDGDAWIKPTGVPYASGMM 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32417976 32419783 + Sed0017048.1 Sed04g1778 710381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1778 561 ProSitePatterns Pectinesterase signature 1. 275 294 IPR018040 -
Sed04g1778 561 Pfam Plant invertase/pectin methylesterase inhibitor 59 208 IPR006501 GO:0004857(InterPro)
Sed04g1778 561 Gene3D - 244 560 IPR012334 -
Sed04g1778 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 209 IPR035513 -
Sed04g1778 561 CDD PMEI-like_3 63 208 - -
Sed04g1778 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 211 IPR035513 -
Sed04g1778 561 PANTHER PECTINESTERASE 11 551 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed04g1778 561 NCBIfam pectinesterase inhibitor domain 56 209 IPR006501 GO:0004857(InterPro)
Sed04g1778 561 FunFam Pectinesterase 57 212 - -
Sed04g1778 561 FunFam Pectinesterase 244 560 - -
Sed04g1778 561 SUPERFAMILY Pectin lyase-like 247 558 IPR011050 -
Sed04g1778 561 Pfam Pectinesterase 250 546 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed04g1778 561 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Sed04g1778 561 SMART PMEI_2 56 208 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1778 Sed-Chr4:32417976 Sed09g0255 Sed-Chr9:2036900 7.10E-249 dispersed
Sed02g0010 Sed-Chr2:1906781 Sed04g1778 Sed-Chr4:32417976 2.50E-124 transposed
Sed12g0805 Sed-Chr12:4944696 Sed04g1778 Sed-Chr4:32417976 2.00E-182 wgd
Sed02g1163 Sed-Chr2:48755114 Sed04g1778 Sed-Chr4:32417976 2.10E-200 wgd
Sed04g1778 Sed-Chr4:32417976 Sed06g0037 Sed-Chr6:219585 3.90E-114 wgd
Sed04g1778 Sed-Chr4:32417976 Sed06g2286 Sed-Chr6:46340802 2.00E-110 wgd
Sed04g1778 Sed-Chr4:32417976 Sed09g1726 Sed-Chr9:40469150 5.70E-105 wgd
Sed04g1778 Sed-Chr4:32417976 Sed09g0254 Sed-Chr9:2032683 5.40E-249 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1778 K01051 - csv:101221958 832.017