Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1779 ATGGCCACCGACGTCGCCGCCGATGACGACGACGGCTTCTTCTCTCCGCCGTCGTACAAACACTACGCTCTCACCGGTAAAGTTATGCTCGCCGCAATTATTGCTCTGTTTTTTGTCGTTATTCTCATGATTTGTCTCCATCTCTATGTTCGATTGTACCTCCTGTCTCACACGCGCCGTCAATCCCACCGCCGCCGCAGCCGCCGTCCGCAGTTCGTATTCACGGCGGCGCCTCGTAATGCCGCCGCCGCCGTTCCGTCGCGTGGTTTGCCGCAGTCGGTTCTCAAGTCTCTGCCCGTTTTCATTCACGCTGTGACACCCGACCCGGACGGAGACCCGAACCCGATTTTTTGCGCGGTTTGTTTATCGGAGTTTGAAGAGAACGAAAAGGGCCGGGTCATACCCAAATGTAATCACAGCTTTCACGTGGAGTGTATTGATATGTGGTTTTACTCCCACGTGACCTGCCCGCTGTGTAGATCCGAGGTGAAACCCGAACTTGGATCCGAATCTCGTAATAACCCGGTCGAGGCAGCTGTTGATATTTACGAACCGGATTCGGTGTCGGTGGAGGAAGAACCGGGTATTGGTAATCCGGTTGAGGTATCTTCGACGGTTGAGATGAACGACGAGTCGAGGGAACTGGACGACATGTCGGATTGTGGGACCTCGAGGGCAACGAATATTGTGAAGTCGTTGTCGTTGAAGAGGATTCTGTGTGGAGATGTGACGGAACGGAGTCATGATAAGAAGGAAACGGAGGCGGTGGGCCCAGAAAGATAA 783 53.9 MATDVAADDDDGFFSPPSYKHYALTGKVMLAAIIALFFVVILMICLHLYVRLYLLSHTRRQSHRRRSRRPQFVFTAAPRNAAAAVPSRGLPQSVLKSLPVFIHAVTPDPDGDPNPIFCAVCLSEFEENEKGRVIPKCNHSFHVECIDMWFYSHVTCPLCRSEVKPELGSESRNNPVEAAVDIYEPDSVSVEEEPGIGNPVEVSSTVEMNDESRELDDMSDCGTSRATNIVKSLSLKRILCGDVTERSHDKKETEAVGPER 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32421437 32422300 - Sed0017362.1 Sed04g1779 710382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1779 260 FunFam E3 ubiquitin-protein ligase ATL6 78 166 - -
Sed04g1779 260 SUPERFAMILY RING/U-box 113 168 - -
Sed04g1779 260 SMART ring_2 118 159 IPR001841 -
Sed04g1779 260 Pfam Ring finger domain 118 160 IPR001841 -
Sed04g1779 260 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Sed04g1779 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 166 IPR013083 -
Sed04g1779 260 CDD RING-H2_EL5-like 118 160 - -
Sed04g1779 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 29 201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1779 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1779 Sed-Chr4:32421437 Sed04g2364 Sed-Chr4:37075039 1.50E-23 dispersed
Sed12g0807 Sed-Chr12:4964819 Sed04g1779 Sed-Chr4:32421437 1.70E-31 wgd
Sed04g1779 Sed-Chr4:32421437 Sed06g0040 Sed-Chr6:243531 6.40E-19 wgd
Sed04g1779 Sed-Chr4:32421437 Sed06g2282 Sed-Chr6:46324007 2.30E-16 wgd
Sed04g1779 Sed-Chr4:32421437 Sed09g1727 Sed-Chr9:40482440 3.60E-22 wgd
Sed04g1779 Sed-Chr4:32421437 Sed09g0253 Sed-Chr9:2029102 9.10E-74 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g1779 . 20 194 Rapid Response to Elicitors AT3G16720 55.3 5.9e-40 162.5
Sed04g1779 . 20 194 Rapid Response to Elicitors AT3G16720 55.3 5.9e-40 162.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013742 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 0 1 0 2 1 1 0 1 1 1 1 1 2 1 0 25