Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1779 ATGGCCACCGACGTCGCCGCCGATGACGACGACGGCTTCTTCTCTCCGCCGTCGTACAAACACTACGCTCTCACCGGTAAAGTTATGCTCGCCGCAATTATTGCTCTGTTTTTTGTCGTTATTCTCATGATTTGTCTCCATCTCTATGTTCGATTGTACCTCCTGTCTCACACGCGCCGTCAATCCCACCGCCGCCGCAGCCGCCGTCCGCAGTTCGTATTCACGGCGGCGCCTCGTAATGCCGCCGCCGCCGTTCCGTCGCGTGGTTTGCCGCAGTCGGTTCTCAAGTCTCTGCCCGTTTTCATTCACGCTGTGACACCCGACCCGGACGGAGACCCGAACCCGATTTTTTGCGCGGTTTGTTTATCGGAGTTTGAAGAGAACGAAAAGGGCCGGGTCATACCCAAATGTAATCACAGCTTTCACGTGGAGTGTATTGATATGTGGTTTTACTCCCACGTGACCTGCCCGCTGTGTAGATCCGAGGTGAAACCCGAACTTGGATCCGAATCTCGTAATAACCCGGTCGAGGCAGCTGTTGATATTTACGAACCGGATTCGGTGTCGGTGGAGGAAGAACCGGGTATTGGTAATCCGGTTGAGGTATCTTCGACGGTTGAGATGAACGACGAGTCGAGGGAACTGGACGACATGTCGGATTGTGGGACCTCGAGGGCAACGAATATTGTGAAGTCGTTGTCGTTGAAGAGGATTCTGTGTGGAGATGTGACGGAACGGAGTCATGATAAGAAGGAAACGGAGGCGGTGGGCCCAGAAAGATAA 783 53.9 MATDVAADDDDGFFSPPSYKHYALTGKVMLAAIIALFFVVILMICLHLYVRLYLLSHTRRQSHRRRSRRPQFVFTAAPRNAAAAVPSRGLPQSVLKSLPVFIHAVTPDPDGDPNPIFCAVCLSEFEENEKGRVIPKCNHSFHVECIDMWFYSHVTCPLCRSEVKPELGSESRNNPVEAAVDIYEPDSVSVEEEPGIGNPVEVSSTVEMNDESRELDDMSDCGTSRATNIVKSLSLKRILCGDVTERSHDKKETEAVGPER 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32421437 32422300 - Sed0017362.1 Sed04g1779 710382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1779 260 FunFam E3 ubiquitin-protein ligase ATL6 78 166 - -
Sed04g1779 260 SUPERFAMILY RING/U-box 113 168 - -
Sed04g1779 260 SMART ring_2 118 159 IPR001841 -
Sed04g1779 260 Pfam Ring finger domain 118 160 IPR001841 -
Sed04g1779 260 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Sed04g1779 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 166 IPR013083 -
Sed04g1779 260 CDD RING-H2_EL5-like 118 160 - -
Sed04g1779 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 29 201 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1779 Sed-Chr4:32421437 Sed04g2364 Sed-Chr4:37075039 1.50E-23 dispersed
Sed12g0807 Sed-Chr12:4964819 Sed04g1779 Sed-Chr4:32421437 1.70E-31 wgd
Sed04g1779 Sed-Chr4:32421437 Sed06g0040 Sed-Chr6:243531 6.40E-19 wgd
Sed04g1779 Sed-Chr4:32421437 Sed06g2282 Sed-Chr6:46324007 2.30E-16 wgd
Sed04g1779 Sed-Chr4:32421437 Sed09g1727 Sed-Chr9:40482440 3.60E-22 wgd
Sed04g1779 Sed-Chr4:32421437 Sed09g0253 Sed-Chr9:2029102 9.10E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1779 - - - 0.0