Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1822 ATGTCTCTGAAGAGCATCTTTCAAGATATGAGGTCCCGCTCCCGGCGCGTGGTGCAGGACGGCTCGCCGACGGCGCCGACGGACGCCCTCGACCAGAGCTGCTGGGCCAGCATGCCTCACGAGCTTCTCCGGGAGGTTCTGATCAGAATCGAGGCCTCCGAGACCTCCTGGCCGCCGAGGAAGACTGTCGTCGCCTGCGCCGGAGTCTGCCGGAGCTGGCGAGCCATTTCCAAGGACATCGTTCAATCGCCCGAGCTTTCCGGCAGGTTGACGTTCCCGATCTCTATCAAGCAGCCTGGTCCAAGGGATCCTCTTCTACAGTGTTTCATTAAGCGAAACCGATCCAATCAAACTTATTATCTCTTTCTCAGTTTGACTCCTGCACTAACTGATGATGGTAAATTTCTACTTGCCGCTCGTAAATGCAAGCGCCCGACTTACACAGATTATATTATCTCCTTACATGCAGAGGATTTGTCAAAGGGGAGCAGCACTTATGTTGGGAAATTGAGGTCTAATTTTCTAGGAACAAAGTTCACAATCTTTGATGGGCAGCCACCACATTCTGGAGCCAAGATCACAAAAAGTCGCTCGACTAGGCTAGTGAATTTGAAACAAGTTTCTCCCAAATTCCCCGCGGGGAACTATCCAGTCGCTCACATTTCATATGAACTAAATGTATTGGGATCAAGGGGTCCAAGGAGAATGCAGTGTATCATGAACACTATTCCCGCTTCTGCAGTTGAACCCGGAGGAGTGGCTCCCACGCCGACTGAGCTCTCTTTGAGCAACGTGGAATTGTTTCCATCATTCCCGTTCCTAAGGTCAAAATCCAATGCAGATAGATTGCTTTCCGAACCTTTGGGCAGTCAGAAAGATGGAATGCTGGTGCTGAGAAACAAGACTCCACGGTGGCACGAGCAGCTTCAGTGCTGGTGTTTGAACTTTCATGGAAGAGTTACCACTGCTTCCGTGAAAAATTTTCAACTAGTCGCAGCTTCGGAAAATGAACCACCTACACCAGAACATGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCTCGATGGATTATCGTTACCCGATCTCCGCTTTCCAGGCTTTTGCAATCTGCCTCAGCAGCTTTGACACCAAGATAGCTTGTGAATGA 1161 49.7 MSLKSIFQDMRSRSRRVVQDGSPTAPTDALDQSCWASMPHELLREVLIRIEASETSWPPRKTVVACAGVCRSWRAISKDIVQSPELSGRLTFPISIKQPGPRDPLLQCFIKRNRSNQTYYLFLSLTPALTDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKITKSRSTRLVNLKQVSPKFPAGNYPVAHISYELNVLGSRGPRRMQCIMNTIPASAVEPGGVAPTPTELSLSNVELFPSFPFLRSKSNADRLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTTASVKNFQLVAASENEPPTPEHEKIILQFGKVGKDLFSMDYRYPISAFQAFAICLSSFDTKIACE 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32962645 32966039 - Sed0014807.1 Sed04g1822 710425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1822 386 FunFam Tubby-like F-box protein 92 386 - -
Sed04g1822 386 ProSitePatterns Tub family signature 1. 316 329 IPR018066 -
Sed04g1822 386 Gene3D - 28 86 - -
Sed04g1822 386 SUPERFAMILY F-box domain 28 79 IPR036047 GO:0005515(InterPro)
Sed04g1822 386 Pfam Tub family 97 381 IPR000007 -
Sed04g1822 386 SUPERFAMILY Tubby C-terminal domain-like 84 386 IPR025659 -
Sed04g1822 386 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Sed04g1822 386 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Sed04g1822 386 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Sed04g1822 386 PRINTS Tubby superfamily signature 316 332 IPR000007 -
Sed04g1822 386 PRINTS Tubby superfamily signature 343 362 IPR000007 -
Sed04g1822 386 PRINTS Tubby superfamily signature 298 315 IPR000007 -
Sed04g1822 386 PRINTS Tubby superfamily signature 364 386 IPR000007 -
Sed04g1822 386 CDD F-box_AtTLP-like 35 79 - -
Sed04g1822 386 Pfam F-box domain 35 79 IPR001810 GO:0005515(InterPro)
Sed04g1822 386 Gene3D Tubby Protein; Chain A 93 386 IPR025659 -
Sed04g1822 386 ProSitePatterns Tub family signature 2. 371 386 IPR018066 -
Sed04g1822 386 PANTHER TUBBY-RELATED 29 385 - -
Sed04g1822 386 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1548 Sed-Chr4:30236640 Sed04g1822 Sed-Chr4:32962645 5.00E-105 dispersed
Sed04g1822 Sed-Chr4:32962645 Sed13g0889 Sed-Chr13:6591280 7.10E-123 dispersed
Sed12g0866 Sed-Chr12:5360522 Sed04g1822 Sed-Chr4:32962645 1.70E-177 wgd
Sed02g1224 Sed-Chr2:49103413 Sed04g1822 Sed-Chr4:32962645 3.70E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38190 PF01167 Tub 1.00E-109 CL0395 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1822 K19600 - csv:101203437 716.072