Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1823 ATGGCGCCGGAAATAGTTGTCGAATCAGGCTCGTCGATAGTGGATTTGGGGATGGAGTTAGTTGCGGACCATACTTCGGTTGTTTCTTTGAACTTATTTGTAGCTCTTATTTGCGGTTGCATTGTTATCGGCCATTTGTTAGAGGAAAATCGATGGATTAATGAGTCTATTACGGCCCTTGTCATTGGACTGTGTACCGGCATCATAATATTGTTAACAACTAGAGGGAAAAGCTCGCACTTATTTTTGTTCAATGAAGAGCTTTTCTTTATTTATCTCCTTCCGCCCATCATTTTCAATGCCGGGTTTCAGGTCAAGAAGAAGCAGTTTTTCCGCAACATCATGACCATAGTGCTTTTTGGTGCTTTTGGCACTCTCATATCTTTCTGTATTATATCATTAGGCGCTTTGCACTTCTTCCAGAAAATGAATGTTGGTTCCCTTGATCTTGGAGATTACTTAGCTATTGGAGCAATTTTTTCTGCAACAGACTCTGTTTGCACCTTACAAGTTCTTAATCAGGATGAGACCCCTCTTCTGTATAGCCTGGTTTTTGGGGAGGGTGTTGTTAATGATGCCACATCTGTTGTATTATTCAATGCAATCCAGAACTTCGACCTTTCTCACATGAATTCAAGCATTGTTCTGCAATTCATAGGGAACTTTTTGTACCTATTCATTGCAAGTACTGTGCTAGGAGTTTTAGTTGGCCTTCTTAGTGCATACATAATTAAGAAGCTCTACTTTGGCAGGCATTCTACTGATCGTGAAGTTGCTCTTATGATACTCATGGCGTACTTCTCTTATATGCTAGCTGAACTCTTCTATTTAAGTGCAATTCTCACTGTATTCTTTTGCGGTATTGTTATGTCTCACTATACATGGCATAACGTGACAGAACGTTCCAGAGTTACTACAAAGCATGCTTTTGCCACCCTTTCTTTTATTGCTGAGATATTCATCTTTCTTTACGTTGGCATGGACGCTCTTGATATCGAGAAGTGGAGATTTGTTAGCCACAGTCCGGGTAAATCAATTGGGGTGAGCTCAATACTGTTGGGACTGGTTCTGGTTGGTAGAGCAGCATTCGTGTTTCCATTATCCTTCTTGTCCAATCTGACCAAGAAGTCCTCGCATGATAAACTAAACCTGGAACAACAAGTCACTATTTGGTGGGCTGGTCTCATGCGTGGTGCTGTATCGATGGCACTTGCATATAATCAGTTCACAAGGTCAGGCCACACCCATTTACCAGGAAATGCAATCATGATTACCAGTACCATAACTGTTGTTCTTTCCAGCACTGTGGTATTTGGAATGATGACAAAGCCCCTGATAGGGGTTTTGCTACCCCAACCAAAATTCAGCATGAGCATGCTCTCCTCCGAACCCTCATCCCCAAAATCCTTCACAGTCCCCCTCCTCAGCAATGGGCCCAACAGCCCATCCACAACACTGGGCCTTTTCCTGCCGGCCCATACGGCCCACCATCATTGGAGAAGATTCGACGACGCCTTCATGCGCCCTGTCTTTGGAGGGCGGGGCTTTGTGCCCTTCGTCCCGGGCTCCCCTACCGAAGGACCACTGGAAGACGCCGTCATGGATGACAACAAAACCCTTCTTATATAA 1629 44.01 MAPEIVVESGSSIVDLGMELVADHTSVVSLNLFVALICGCIVIGHLLEENRWINESITALVIGLCTGIIILLTTRGKSSHLFLFNEELFFIYLLPPIIFNAGFQVKKKQFFRNIMTIVLFGAFGTLISFCIISLGALHFFQKMNVGSLDLGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQNFDLSHMNSSIVLQFIGNFLYLFIASTVLGVLVGLLSAYIIKKLYFGRHSTDREVALMILMAYFSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTERSRVTTKHAFATLSFIAEIFIFLYVGMDALDIEKWRFVSHSPGKSIGVSSILLGLVLVGRAAFVFPLSFLSNLTKKSSHDKLNLEQQVTIWWAGLMRGAVSMALAYNQFTRSGHTHLPGNAIMITSTITVVLSSTVVFGMMTKPLIGVLLPQPKFSMSMLSSEPSSPKSFTVPLLSNGPNSPSTTLGLFLPAHTAHHHWRRFDDAFMRPVFGGRGFVPFVPGSPTEGPLEDAVMDDNKTLLI 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32986314 32995053 + Sed0005332.1 Sed04g1823 710426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1823 542 Gene3D - 150 201 - -
Sed04g1823 542 Pfam Sodium/hydrogen exchanger family 34 445 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Sed04g1823 542 PRINTS Na+/H+ exchanger signature 88 99 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g1823 542 PRINTS Na+/H+ exchanger signature 102 116 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g1823 542 PRINTS Na+/H+ exchanger signature 117 125 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g1823 542 PRINTS Na+/H+ exchanger signature 157 167 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g1823 542 PANTHER SODIUM/HYDROGEN EXCHANGER 26 522 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1823 Sed-Chr4:32986314 Sed04g3536 Sed-Chr4:44791610 2.20E-215 dispersed
Sed04g1823 Sed-Chr4:32986314 Sed04g1824 Sed-Chr4:32986758 6.10E-306 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1823 - - - 0.0