Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1843 ATGGGTTGTATCCATACGAAATGTTGCTGTCGCTACCCGAAATCGTTGGCCGGAGAATCCCAAGACTTCCGACAAGGGCTTCCTTATTGTCTTCAAGATAAGAACACTGTGATTGAGAGATCATTGGAGTTCATTCCTGTGGCTTCTCACAACTATCATTTGGAATTCTTGGTTCTGGCTCAGCGTGGATTCTACCCTGAATCTCCTGATAAAGAAAACCAAGACAGTTTCTGCATTAGAACCAATTTACAAGGTAACCCAGATGTTCATTTCTTTGGTGTTTTTGATGGGCATGGCCAATTTGGGATGGAGTGTTCAAATTTTGTCAAGGATAGGCTAATAGACAAGCTATGCAATGATTCCACTTTGTTAGATGATCCTGTTCAAGCTTATAATTCTGCATTTTTATCCACTAACGATGAGCTGCATTCGAGTGAGATTGATGATTCCATGAGTGGAACAACTGCAATTACAGTCCTTGTTGTTGGGGATACCCTCTATGTGGCCAATGTGGGTGATTCAAGAGCTGTAATTGCAGTTAGAGAAGGGAGTTCTGTCCTTGCCAAGGACTTGTCCAATGATCAAACACCATTTAGGAAGGATGAGTATGAGAGAGTTAAGCTTTGTGGGGCTAGAGTTTTGAGTGTTGATCAAGTGGAAGGACTTGTGGATCCTGATATACAATGCTGGGGTGATGAAGAAACTCAGGGTGGCGATCCGCCTCGACTGTGGGTTCCGAATGGGTTGTATCCTGGGACTGCATTTACCAGGAGTATAGGTGATAGCACTGCAGAGAAGATCGGTGTGTATGCCGTTCCTGAGGTTTTAGTACTTCGGCTTCACCCGAATCATCTGTTCTTTGTGGTTGCTAGTGATGGAGTTTTCGAGTTCCTTCCAAGTCAAACTGTTGTTGATATGGCTTCAAGTTATGCAGATCCACAGGATGCTTGTACCGCCATTGCTGCCGAGTCGTATAAACTATGGATGGAACATGAAAATCGTACTGATGATATAACGATTATTATTGTTCATATCAAAGGCTTGTCTAATGTATGA 1056 42.99 MGCIHTKCCCRYPKSLAGESQDFRQGLPYCLQDKNTVIERSLEFIPVASHNYHLEFLVLAQRGFYPESPDKENQDSFCIRTNLQGNPDVHFFGVFDGHGQFGMECSNFVKDRLIDKLCNDSTLLDDPVQAYNSAFLSTNDELHSSEIDDSMSGTTAITVLVVGDTLYVANVGDSRAVIAVREGSSVLAKDLSNDQTPFRKDEYERVKLCGARVLSVDQVEGLVDPDIQCWGDEETQGGDPPRLWVPNGLYPGTAFTRSIGDSTAEKIGVYAVPEVLVLRLHPNHLFFVVASDGVFEFLPSQTVVDMASSYADPQDACTAIAAESYKLWMEHENRTDDITIIIVHIKGLSNV 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33137976 33140306 - Sed0023246.1 Sed04g1843 710446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1843 351 PANTHER PROTEIN PHOSPHATASE 70 343 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed04g1843 351 Gene3D - 55 347 IPR036457 -
Sed04g1843 351 SMART PP2C_4 55 343 IPR001932 -
Sed04g1843 351 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Sed04g1843 351 Pfam Protein phosphatase 2C 71 323 IPR001932 -
Sed04g1843 351 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169(InterPro)
Sed04g1843 351 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 50 347 - -
Sed04g1843 351 CDD PP2Cc 71 345 IPR001932 -
Sed04g1843 351 SUPERFAMILY PP2C-like 55 347 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1843 Sed-Chr4:33137976 Sed06g2186 Sed-Chr6:45618828 1.50E-151 dispersed
Sed04g1843 Sed-Chr4:33137976 Sed06g2184 Sed-Chr6:45618828 4.30E-151 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1843 - - - 0.0