Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g1843 | ATGGGTTGTATCCATACGAAATGTTGCTGTCGCTACCCGAAATCGTTGGCCGGAGAATCCCAAGACTTCCGACAAGGGCTTCCTTATTGTCTTCAAGATAAGAACACTGTGATTGAGAGATCATTGGAGTTCATTCCTGTGGCTTCTCACAACTATCATTTGGAATTCTTGGTTCTGGCTCAGCGTGGATTCTACCCTGAATCTCCTGATAAAGAAAACCAAGACAGTTTCTGCATTAGAACCAATTTACAAGGTAACCCAGATGTTCATTTCTTTGGTGTTTTTGATGGGCATGGCCAATTTGGGATGGAGTGTTCAAATTTTGTCAAGGATAGGCTAATAGACAAGCTATGCAATGATTCCACTTTGTTAGATGATCCTGTTCAAGCTTATAATTCTGCATTTTTATCCACTAACGATGAGCTGCATTCGAGTGAGATTGATGATTCCATGAGTGGAACAACTGCAATTACAGTCCTTGTTGTTGGGGATACCCTCTATGTGGCCAATGTGGGTGATTCAAGAGCTGTAATTGCAGTTAGAGAAGGGAGTTCTGTCCTTGCCAAGGACTTGTCCAATGATCAAACACCATTTAGGAAGGATGAGTATGAGAGAGTTAAGCTTTGTGGGGCTAGAGTTTTGAGTGTTGATCAAGTGGAAGGACTTGTGGATCCTGATATACAATGCTGGGGTGATGAAGAAACTCAGGGTGGCGATCCGCCTCGACTGTGGGTTCCGAATGGGTTGTATCCTGGGACTGCATTTACCAGGAGTATAGGTGATAGCACTGCAGAGAAGATCGGTGTGTATGCCGTTCCTGAGGTTTTAGTACTTCGGCTTCACCCGAATCATCTGTTCTTTGTGGTTGCTAGTGATGGAGTTTTCGAGTTCCTTCCAAGTCAAACTGTTGTTGATATGGCTTCAAGTTATGCAGATCCACAGGATGCTTGTACCGCCATTGCTGCCGAGTCGTATAAACTATGGATGGAACATGAAAATCGTACTGATGATATAACGATTATTATTGTTCATATCAAAGGCTTGTCTAATGTATGA | 1056 | 42.99 | MGCIHTKCCCRYPKSLAGESQDFRQGLPYCLQDKNTVIERSLEFIPVASHNYHLEFLVLAQRGFYPESPDKENQDSFCIRTNLQGNPDVHFFGVFDGHGQFGMECSNFVKDRLIDKLCNDSTLLDDPVQAYNSAFLSTNDELHSSEIDDSMSGTTAITVLVVGDTLYVANVGDSRAVIAVREGSSVLAKDLSNDQTPFRKDEYERVKLCGARVLSVDQVEGLVDPDIQCWGDEETQGGDPPRLWVPNGLYPGTAFTRSIGDSTAEKIGVYAVPEVLVLRLHPNHLFFVVASDGVFEFLPSQTVVDMASSYADPQDACTAIAAESYKLWMEHENRTDDITIIIVHIKGLSNV | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 33137976 | 33140306 | - | Sed0023246.1 | Sed04g1843 | 710446 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g1843 | 351 | PANTHER | PROTEIN PHOSPHATASE | 70 | 343 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Sed04g1843 | 351 | Gene3D | - | 55 | 347 | IPR036457 | - | |
Sed04g1843 | 351 | SMART | PP2C_4 | 55 | 343 | IPR001932 | - | |
Sed04g1843 | 351 | ProSiteProfiles | PPM-type phosphatase domain profile. | 55 | 345 | IPR001932 | - | |
Sed04g1843 | 351 | Pfam | Protein phosphatase 2C | 71 | 323 | IPR001932 | - | |
Sed04g1843 | 351 | ProSitePatterns | PPM-type phosphatase domain signature. | 91 | 99 | IPR000222 | GO:0043169(InterPro) | |
Sed04g1843 | 351 | FunFam | Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein | 50 | 347 | - | - | |
Sed04g1843 | 351 | CDD | PP2Cc | 71 | 345 | IPR001932 | - | |
Sed04g1843 | 351 | SUPERFAMILY | PP2C-like | 55 | 347 | IPR036457 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g1843 | Sed-Chr4:33137976 | Sed06g2186 | Sed-Chr6:45618828 | 1.50E-151 | dispersed | |
Sed04g1843 | Sed-Chr4:33137976 | Sed06g2184 | Sed-Chr6:45618828 | 4.30E-151 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g1843 | - | - | - | 0.0 |