Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1854 ATGCAGCCTGATCAGAGAAGAAAGTCGTCTATAGATGTGGATTTCTTCACAGAATATGGTGAAGGGAGCAGGTATAGAATAGAGGAAGTAATTGGTAAAGGAAGTTATGGTGTTGTTTGCTCTGCATATGATTCTCACACTGGGGAAAAAGTTGCAATTAAGAAAATCAATGACATCTTTGAGCATGTCTCTGATTCAACTCGCATTCTTCGTGAGATAAAACTTTTAAGACTTCTGAGGCATCCGGACATTGTGGAGATAAAGCACATCCTACTACCTCCATCCAGAAGGGAATTCAAGGATATATATGTCGTATTTGAGCTCATGGAATCTGATCTACACCAAGTTATCAAAGCAAATGACGATTTGACTCCAGAACACTATCAGTTCTTTCTTTACCAGCTTCTTCGTGGGATGAAGTATATACATACAGCCAATGTCTTCCACCGGGACTTAAAACCCAAAAATATCTTAGCGAATGCTGACTGCAAACTCAAGATCTGTGACTTTGGTCTAGCAAGAGTAGCTTTTCATGATACTCCTACTGCTATTTTCTGGACTGACTATGTAGCCACAAGGTGGTACAGGGCTCCTGAACTGTGTGGTTCATTTTTCTCAAAGTATACACCAGCAATAGATATATGGAGCATTGGCTGCATCTTTGCGGAGCTTTTAACTGGCAAACCACTTTTCCCTGGAAAGAATATCGTCCACCAACTAGATTTGATGACAGATTTTCTGGGAACCCCAAGTGCAGAAGCCATTGCCAGGGTACGAAATGAGAAAGCTCGGAGATACCTAAGCAGTATGCGAAAGAAGAAGCCTGTTCCTTTCTCCCATAAGTTTCCTCATGCGGACCCACTCGCCCTTCGTTTATTGGAAAGAATGTTGGCTTTTGAGCCAAAGGACCGACCTACAGCAGAGGAGGCCCTCGCAGATCCATACTTTAAAGGCTTAGCAAAGGTTGAGAGAGAGCCGTGTGCTCCACCTGTTACTAAGATGGAATTTGAATTTGAGAGACGAAGGATAACCAAAGAAGATGTTAGGGAGCTTATTTACCGCGAGACTCTCGAGTACCATCCAAAGATGTTGAAGGAATACTTGGATGGATCAGAACCTACCGGTTTCATGTATCCAAGTGCAGTTGACCATTTTAAGAAGCAATTTGCCTACCTTGAAGAACACCATGGAAATGGTGTAACTGTTGCTCCTCCTGAAAGACAGCATGCATCCTTGCCCAGGGCATGTGTTTTATATTCAGATAACATGGTGCATAACTCGGCCCAAGTTGCAAATGACCTATCCAAATGTTCCATTAAAGAAGTTGAAAGGCCACAAATCGATAGGACTTGCAATAATCCTTTGACCAGAGTTCCTATTCAAATTCCTAAAGCTATTCAAGGCAGTGGTGCAAGGCCTGGAAAAGTTGTTGGCTCTGTGTTGCGATACAACTGTGGAGCCACAGCAGCAGCAGTGGCCCCAGAAGTTCTCGAGCAGCGAAGAATGATGAGAAACCCTTCGATTCCACCACCGTACGCCGCTAATAACTGTCCATATCCAAGAAGAAACTCATCCTGTAAAAATGAAAGGGCTGAAGATGAAGCCATTGAAGGTTCAAATGGGTTGCAGCCAAAACCTCAGTACATAGCTAGAAAAGTTGCTGCTGCCCAAGGCGGACCAGGAAATAACTGGTACTGA 1698 43.46 MQPDQRRKSSIDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDSHTGEKVAIKKINDIFEHVSDSTRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGMKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFHDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNIVHQLDLMTDFLGTPSAEAIARVRNEKARRYLSSMRKKKPVPFSHKFPHADPLALRLLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPCAPPVTKMEFEFERRRITKEDVRELIYRETLEYHPKMLKEYLDGSEPTGFMYPSAVDHFKKQFAYLEEHHGNGVTVAPPERQHASLPRACVLYSDNMVHNSAQVANDLSKCSIKEVERPQIDRTCNNPLTRVPIQIPKAIQGSGARPGKVVGSVLRYNCGATAAAVAPEVLEQRRMMRNPSIPPPYAANNCPYPRRNSSCKNERAEDEAIEGSNGLQPKPQYIARKVAAAQGGPGNNWY 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33277392 33284113 - Sed0021666.2 Sed04g1854 710457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1854 565 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
Sed04g1854 565 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Sed04g1854 565 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524(InterPro)
Sed04g1854 565 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1854 565 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 22 357 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed04g1854 565 MobiDBLite consensus disorder prediction 513 543 - -
Sed04g1854 565 SMART serkin_6 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1854 565 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1854 565 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Sed04g1854 565 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1854 565 FunFam Mitogen-activated protein kinase 111 339 - -
Sed04g1854 565 CDD STKc_TDY_MAPK 24 361 - -
Sed04g1854 565 FunFam Mitogen-activated protein kinase 15 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1854 Sed-Chr4:33277392 Sed05g3270 Sed-Chr5:42114259 3.10E-204 dispersed
Sed04g1853 Sed-Chr4:33277392 Sed04g1854 Sed-Chr4:33277392 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79012 PF00069 Pkinase 8.50E-68 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1854 - - - 0.0