Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1863 ATGGAAAAGGATCAAGTTGATTCGAGTGTTCAGTTATCTGGGCTGTGGAATATCATTCGTTTAAGGAGAAGCTTCAAAGAGGACAGTGTTCCTTGCCAAATCGAAGAGGGCCTGTTCTTAGGTTCTGTTGGTGCTGCCCATAACAAGGATGAACTGAAGAAATTGAATATCACTCACATTTTAACCATAGCTTGTTCCTTGCCACCTGCTGATCCAAATGATTTTGTGCAGAAAGTAGTTGGTGTCTTGGACACTAGAGAAGCTAATATTCAACAGCACTTCGAAGATTGTTTCAATTTTATTGATGGAGGAAGACAATCTGGTGGAGGGGTCTTGGTTCATTGCTTTGCTGGAATATCGAGAAGTGTAACTATAACAGTTGCCTACCTGATGAAAAAGCATGGTATGAATTTAACTCAAGCGTTGGAACATGTCAAGAGTAAACGGCCACAGGCTTCTCCAAACGTCGGTTTCATGGTTCAACTCAAGGACTTCGAAACAGCTCTTCAAGCTAGCAAAGAGGATGTGGTGAAATTATCAAATGTGTGA 549 41.35 MEKDQVDSSVQLSGLWNIIRLRRSFKEDSVPCQIEEGLFLGSVGAAHNKDELKKLNITHILTIACSLPPADPNDFVQKVVGVLDTREANIQQHFEDCFNFIDGGRQSGGGVLVHCFAGISRSVTITVAYLMKKHGMNLTQALEHVKSKRPQASPNVGFMVQLKDFETALQASKEDVVKLSNV 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33406248 33409233 - Sed0025182.1 Sed04g1863 710466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1863 182 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 29 169 - GO:0004721(PANTHER)|GO:0008330(PANTHER)|GO:0017017(PANTHER)|GO:0033550(PANTHER)|GO:0043409(PANTHER)
Sed04g1863 182 CDD DSP 31 164 - -
Sed04g1863 182 ProSiteProfiles Dual specificity protein phosphatase domain profile. 30 171 IPR020422 GO:0006470(InterPro)
Sed04g1863 182 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 30 171 IPR029021 -
Sed04g1863 182 Gene3D Protein tyrosine phosphatase superfamily 24 179 IPR029021 -
Sed04g1863 182 Pfam Dual specificity phosphatase, catalytic domain 38 167 IPR000340 GO:0016311(InterPro)
Sed04g1863 182 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 92 150 IPR000387 GO:0016311(InterPro)
Sed04g1863 182 SMART dsp_5 30 168 IPR020422 GO:0006470(InterPro)
Sed04g1863 182 FunFam Dual specificity phosphatase 12 32 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1863 Sed-Chr4:33406248 Sed04g1865 Sed-Chr4:33406248 9.40E-102 dispersed
Sed04g1863 Sed-Chr4:33406248 Sed04g1864 Sed-Chr4:33406248 5.80E-67 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1863 - - - 0.0