Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1877 ATGCAAGATTTCTTCGGATCCGTTCGCCGATCCTTGGTGCTTCTAGCTCCCGACGGCGACGACGGCGGCGGTAGGTTCGGCGGCCTGGTTGAGAAGATCGGCTCCAGCATTCGTAAATCTCGAAATGGGCTGTTCTCCAAGCAATCGTTGCGGGCTCTCCCCCGGCCGCCTGCGAAGGAAGATGTGCCTCCGATCTGGTGGCGGAAGGGAGAGTTGATCGGTTGCGGTGCTTTCGGTCGAGTTTACATGGGGATGAATCTAGATTCGGGGGAGCTTCTTGCAGTCAAACAAGTCTCAATTGCGGCTAATAGTGCTTCAAGAGAAAAGGCGCAAGCTCAAATACGAGAGCTGGAGGAGGAAGTGAAGCTTTTGAAGAATCTTTCGCACCCTAATATTGTTAGATATCTAGGAACTGCCAGAGAGGAAGGTTCATTAAATATTCTATTGGAGTTTGTTCCTGGTGGATCGATATCATCTCTGTTAGGGAAATTTGGATCTTTCCCCGAGTCTGTTATCATAACCTACACGAAGCAGCTATTACTGGGGCTTGAGTACCTTCATAAGAACGGCATTATGCATAGGGATATTAAGGGTGCAAATATACTTGTAGACAATAAGGGGTGCATTAAACTTGCTGATTTTGGTGCATCCAAGAAAGTGGTTGAACTGGCAACTATAAATGGAGCCAAATCAATGAAGGGTACTCCGTATTGGATGGCTCCTGAAGTTATTCTACAGACTGGACATAGCTTCTCTGCTGATATATGGAGTGTGGGGTGTACTGTTATTGAAATGGCAACAGGGAAGCCTCCATGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTCCACATAGGAAATACTAAGTCGCATCCGCCCATTCCTGAGCACCTATCTCCTGAGGCTAAAGATTTTCTGTTAAAATGTTTACAAGAGGAGCCAGACTCAAGGCCTACTGCAACAGACTTACTGCAGCATCCATTTGTCTCATGTGAGTATCAAGATCCTCATGCAGGAGTCCGTGCCTCTTCTGTGGAATCTGGGAAACAGATGAATGATTCTAGGCTGAACTCTAATGATATAACAAAATCTACAATCCAACGGTCAACCTGTGAAGGCTTGAAGGATATCTGTGAAATGGGTAGCTTGAGGTGCTCGTCTGTATTCTCCAGGAACTTTGGGTCACACTCCAATTGGGGCTCTGGCAATTTTGAGGATGACATGTGCCAGATAGATGATAAAGATTTGTTTGTTAGTTCATCAATAAAGTACAAATCTATTTCATCACCAAACGATTTGAATAAGAGTTTCAATCCTATGTGTGAACCCACTGATGACTGGGCATGTAAATTGGATGAGAGCTCAGAATTGGGAGGCAAATTAATGGAACTGTCTGGCACTCAAACTGGCCAGGAATCTACTAGCAAGGGGAATGACTTCACTTTTCCATGTGGCCAATCCGGAGCTGAGGATGATGAAGAAGTAACAGAGTCGAAGATTAAAGCCTTCCTTGATGATAAGGCTGTAGAACTGAAGAAGCTGCAAACGCCTTTATACGAAGAGTTCCGGAGCACAATTAATGCAGCTAATGCCGTAGGAGCAGTTGGAACTGAGAATAGCAAGAGTGTAGCTAATTTTTTGAAGTTGCCTCCTAAATGTGGATCACCAAGTAAGCTGCGTGGTAAAAGGCTCTCATCAATTGATGCTAGTAACTGTTCCAGCCGTCAGAGCCGTATAAAACAAGCTAGCATATTGCAAGATCGAGCTCTACAGGAAATTCAGTCTCCTCAGCTTGGGGAATGGAACAGATTGCTTCATACACAGCCAGAGTCTAGTACACCAAGTTTCTCTGAGAGACAAAGGAAATGGAAAGAAGAGCTTGAGGAAGAACTTAAAAGGGAGAGAGGTTAG 1911 45.11 MQDFFGSVRRSLVLLAPDGDDGGGRFGGLVEKIGSSIRKSRNGLFSKQSLRALPRPPAKEDVPPIWWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVSIAANSASREKAQAQIRELEEEVKLLKNLSHPNIVRYLGTAREEGSLNILLEFVPGGSISSLLGKFGSFPESVIITYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGNTKSHPPIPEHLSPEAKDFLLKCLQEEPDSRPTATDLLQHPFVSCEYQDPHAGVRASSVESGKQMNDSRLNSNDITKSTIQRSTCEGLKDICEMGSLRCSSVFSRNFGSHSNWGSGNFEDDMCQIDDKDLFVSSSIKYKSISSPNDLNKSFNPMCEPTDDWACKLDESSELGGKLMELSGTQTGQESTSKGNDFTFPCGQSGAEDDEEVTESKIKAFLDDKAVELKKLQTPLYEEFRSTINAANAVGAVGTENSKSVANFLKLPPKCGSPSKLRGKRLSSIDASNCSSRQSRIKQASILQDRALQEIQSPQLGEWNRLLHTQPESSTPSFSERQRKWKEELEEELKRERG 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33469910 33473745 + Sed0005769.2 Sed04g1877 710480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1877 636 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 57 330 IPR050538 -
Sed04g1877 636 SUPERFAMILY Protein kinase-like (PK-like) 67 330 IPR011009 -
Sed04g1877 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1877 636 Pfam Protein kinase domain 68 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1877 636 FunFam Serine/threonine-protein kinase STE11 64 157 - -
Sed04g1877 636 FunFam Mitogen-activated protein kinase kinase kinase 2 66 358 - -
Sed04g1877 636 Coils Coil 100 127 - -
Sed04g1877 636 Gene3D Transferase(Phosphotransferase) domain 1 67 369 - -
Sed04g1877 636 ProSiteProfiles Protein kinase domain profile. 67 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1877 636 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524(InterPro)
Sed04g1877 636 SMART serkin_6 67 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1877 636 CDD STKc_MAPKKK 67 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1877 Sed-Chr4:33469910 Sed08g1693 Sed-Chr8:32027785 1.60E-196 dispersed
Sed04g1876 Sed-Chr4:33469910 Sed04g1877 Sed-Chr4:33469910 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79014 PF00069 Pkinase 6.50E-72 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1877 K20606 - csv:101217427 1072.38