Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1880 ATGACGACGACGACGGCGATGACGACGGCGATACCAGGGAGCATTGCCGCTGTTCTTCTCCTCATGTTCCTTCTCATCCTCTTATTCTTCGTCTTCATTTCCTGCAAACCATGGCGATTCTTTTCCTATCCTCGTTCTCGCACCATCAAGGTTCATGACATTGAGAGACCCCTTGTCTCTGATGCTGCGGATGATACTCAAAACCAAATCAATGAACTTCCCAGAGATTATGATTTAGAGGGTGCACTTCAAACTGATGGACATTTTCGGTCTCCACGATTACACAGACTGATCCATAAACAAAGACTGCCAGCTGCCTCTCCCTATTCAAGTCAGGGTGATATATTGGTTCCAGATGTAGTTATTGCTCCTACAGAAGATATTTCCGTTGGTCAAACACTTAAACGTCCGTACGTCACATGCCCGCTTCCAGAGGGTCAGAAGCATGCAAAACTGAGCCTAGGAAGTGATCAACTCCAAGATATTGAGAGTCAAGCTATCTCACTTAGAAGAAGTTACCTCACTTTGGAGGTTACCTCGGGTCCTTCTCGTGGAGTGCGTGATTCCATACATTCTGCGGATACATCTAGGCTCCAATTGTTTCTTGGAAGATTACCATCTAGTGATTTACAACTGAATGATTCTGAAGTCTCAGGGAATCATGCCTCGATCAAATGGAATCTAAATAATATGAAATGGGAGCTTGTGGATCTGGGTAGCTTAAATGGGACCTTGTTAAATTCTCGACCTATCAACAATCTTGAATCTGGAAGTAGACGAAGGGGTGACCCAGTTGAGCTTGCAAGTGGAGATGTTATAACTCTTGGTACAACCTCCAAAGTGTATGTTCATATTGCATCTCAGACTGAGAGCCATGTTCCCTTTGGAGTTGGTATGGCTTCAGATCCAATGGCTGTACATCGAGGTGGAAAGAAGCTTGCCATGGAAGATGTTAGCTATTATCAATGGCCTCTTCCTGGGGTTGATCAGTTTGGACTCTTTGGAATCTGCGATGGACATTGTGGAGTTGGGGCTGCCAAATCTGCTAGCGAGATTCTTCCGCAGAAGATAGCCACAATTCTATCTGATCCACTGAAAATGGACGAGGTTGTTTCGCTTGGCGATGCTTCAGATGTTCTTAGAGAAGCATTTTCTCAGACTGAAGCTTGCATGAATCACTATTATGAGGGTTGTACTGCCACGGTGCTTTTAGTATGGGCTCGGTCTGATAGTGATGATAACTACTTTTTGCAATGTGCTAATGTTGGGGACTCTGCTTGTGTTCTGAATGTTAATGGGAAGCAGATGAAGATGACAGAAGACCACAGAATAACAAGCGATTCAGAAAGACTCCGTATAGAACAAGTAGGAGCACCATTGAAAAAGGGCGAGACGCGTTTGTGCGGTTTGAACCTTGCAAGGATGCTTGGGGACAAGTTTCTTAAACAACAAGACCATCGTTTCAGTTCAGAACCTTACATAAGTGAAGTTGTCCGTGTAGATCGAGGCAAAGCTTTTGCAGTGATGGCAAGGTGGTTTTATTTCTGA 1548 44.44 MTTTTAMTTAIPGSIAAVLLLMFLLILLFFVFISCKPWRFFSYPRSRTIKVHDIERPLVSDAADDTQNQINELPRDYDLEGALQTDGHFRSPRLHRLIHKQRLPAASPYSSQGDILVPDVVIAPTEDISVGQTLKRPYVTCPLPEGQKHAKLSLGSDQLQDIESQAISLRRSYLTLEVTSGPSRGVRDSIHSADTSRLQLFLGRLPSSDLQLNDSEVSGNHASIKWNLNNMKWELVDLGSLNGTLLNSRPINNLESGSRRRGDPVELASGDVITLGTTSKVYVHIASQTESHVPFGVGMASDPMAVHRGGKKLAMEDVSYYQWPLPGVDQFGLFGICDGHCGVGAAKSASEILPQKIATILSDPLKMDEVVSLGDASDVLREAFSQTEACMNHYYEGCTATVLLVWARSDSDDNYFLQCANVGDSACVLNVNGKQMKMTEDHRITSDSERLRIEQVGAPLKKGETRLCGLNLARMLGDKFLKQQDHRFSSEPYISEVVRVDRGKAFAVMARWFYF 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33492360 33498403 + Sed0021968.2 Sed04g1880 710483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1880 515 CDD FHA_PP2C70-like 174 284 - -
Sed04g1880 515 ProSiteProfiles Forkhead-associated (FHA) domain profile. 200 251 IPR000253 GO:0005515(InterPro)
Sed04g1880 515 SMART PP2C_4 290 510 IPR001932 -
Sed04g1880 515 SUPERFAMILY PP2C-like 307 497 IPR036457 -
Sed04g1880 515 SMART FHA_2 199 251 IPR000253 GO:0005515(InterPro)
Sed04g1880 515 Pfam FHA domain 202 276 IPR000253 GO:0005515(InterPro)
Sed04g1880 515 PANTHER PROTEIN PHOSPHATASE 2C 308 510 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Sed04g1880 515 SUPERFAMILY SMAD/FHA domain 172 284 IPR008984 GO:0005515(InterPro)
Sed04g1880 515 Gene3D - 303 510 IPR036457 -
Sed04g1880 515 ProSiteProfiles PPM-type phosphatase domain profile. 296 515 IPR001932 -
Sed04g1880 515 CDD PP2Cc 304 510 IPR001932 -
Sed04g1880 515 Gene3D - 168 302 - -
Sed04g1880 515 Pfam Protein phosphatase 2C 309 510 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1880 Sed-Chr4:33492360 Sed09g0776 Sed-Chr9:15494913 3.80E-196 dispersed
Sed04g1880 Sed-Chr4:33492360 Sed04g1882 Sed-Chr4:33501062 9.20E-110 proximal
Sed04g1879 Sed-Chr4:33492360 Sed04g1880 Sed-Chr4:33492360 1.00E-287 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1880 K01090 - csv:101217195 774.237