Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g1887 | ATGCTGTCGAATCAACTTCAAAATGGGATGGACAGAGCAATGAACGTGTGGTCCCGGATTCCGAACGCCGACGAAGACGAGGACGATCGTGTCGGGTTCTTGAAGAAGAATGATGGGTTTGGCGTCGAAAGCCTTGATTACGAGGTTATCGAGAATTATGCTTACTGGGATGAGCAGGCTAAAAGAGGGAAATTATTTATTGGCTATAGCGTGGTAGTTAAGTGGCTGTATGCTTTGCTCATTGGCATTGGCACAGGATTGGCTGCAGTTTTCATAAATATGGCTGTTGAGAACTTTGCTGGGTGGAAATTTTCATTGACATTTTCCCTAATTCAAAAGTCATATGTGGCTGGTTTTATAGTATACTTAGCAATCAACTTGGTCCTAGTATTATCATCTGTATATATAGTCACAAACTTTGCTCCCGCAGCAGCTGGGTCTGGCATACCTGAAATCAAGGGTTATTTGAATGGAATTGACATTCATGGCGTCCTTTTCTTCAGAACCCTAATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGTGGATTGGCTTTAGGCAAGGAAGGGCCTCTTGTACATACTGGAGCCTGTATTGCTTCTTTGTTAGGACAAGGTGGTTCTGGTAAATATCATCTTAATTCCAGATGGCTACAAGTGTTCAAGAGTGACCGGGATCGTCGTGATCTTGTGACCTGTGGGTGTGCAGCAGGAGTCGCTGCAGCTTTTAGAGCTCCAGTTGGTGGTGTATTGTTTGCATTGGAAGAAGTAACATCGTGGTGGAAGAGTCAACTTTTGTGGCGTGTGTTTTTTACTTCTGCTGTCGTGGCTGTTGTGGTGCGTGCAGCTATGGGATGGTGTAAGAGTGGAAAGTGTGGACATTTTGGTTCGGGTGGTTTCATAATATGGGACATATCAGATGGCCAAGAGGATTACTCTTTTGGGGAGTTGTTGCCCATGGCTGTGATTGGGGTTATAGGAGGCTTATTAGGAGCACTATTCAACCAGCTTACTCTTTACATGACTTATTGGCGACGAAACCATTTGCACAAGAAAGGAAACCGAGTCAAGATCATTGAGGCTTGTCTGATATCAGTAATAACATCAATTATTTCCTTCGGACTGCCACTTCTAAGGCAATGTACTCCATGCCCTAAAATTGATCCTGAATTGGGTAATGAATGCCCAAAGCCTCCAGGGGTGTATGGGAATTATGTTAATTTTTACTGCAGTAAAGACAATGAATACAATGACCTTGCAACCATTTTCTTCAACACCCAGGATGATGCAATAAGGAATTTGTTCAGTGCAAAAACAATGCATGAATTCAGTGCACGGAGTTTATTGACCTTTTTGGTTATGTTTTATACATTAGCTGTCGTGACATTTGGTACTGCAGTTCCTGCTGGTCAATTTGTTCCTGGTATAATGATTGGATCTACATATGGACGTTTGGTTGGCAAGTTTGTGGTTAGTTTCTACAAGAAACCCAACATTGAAGAGGGAACATATGCTTTGTTGGGTGCTGCATCTTTTCTCGGAGGTTCTATGCGAATGACTGTGTCTCTGTGTGTCATCATGGTTGAAATTTCAAACAATTTGAAATTTCTACCTCTCATCATGCTTGTTCTTCTGATTTCCAAGGCTGTTGGCGATGCCTTCAATGAAGGCCTATATGAAGAGCAGGCTCAACTGAGGGGTATTCCATTGCTGGAATCAAGACCAAAGTACCAGATGCGGAAGATTACAGCAAAGGAGGCCTGTGGAAAAAGGGTTGTCTCCTTCCCCCGCGTTGTTAAGGTTGCTGATGTTGTTAGTATTTTGCGGAGCAACAGACATAATGGCTTTCCTGTGATTGATTACTCAAGAAATGGAGAAACGCGTGTCATCGGACTGATGCTTAGAAGTTACTTGTTAGCACTTCTGCAGTCTAAAGTAGATTTTCAGCACAGTCCTTTGCCTTCTGATACAAGAGGATCCATATCAACCAGGCACAATTTCAGTGAATTTGTGAAGCCTGCATCCAGTAAAGGAATTTCTATTGATGATATACATCTTAGTTCAGAAGACTTGGAAATGTACATTGATCTGCTCCCGTATTTGAATCCTTCTCCTTATATTGTCCCAGAAGATATGTCTTTGACAAAGGTATATAATCTTTTCCGGCAACTAGGTCTGAGACACGCATTTGTCGTTCCTCGTCCATCAAATGTGGTTGGTTTAATAACTAGAAAGGATTTGTTGATAGAGGATAGTGAAGACTCAGATGCATTGGAACTACAATCGACAAGTAGCTCGGCATCGAGATAG | 2313 | 42.37 | MLSNQLQNGMDRAMNVWSRIPNADEDEDDRVGFLKKNDGFGVESLDYEVIENYAYWDEQAKRGKLFIGYSVVVKWLYALLIGIGTGLAAVFINMAVENFAGWKFSLTFSLIQKSYVAGFIVYLAINLVLVLSSVYIVTNFAPAAAGSGIPEIKGYLNGIDIHGVLFFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSGKYHLNSRWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWKSQLLWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFGELLPMAVIGVIGGLLGALFNQLTLYMTYWRRNHLHKKGNRVKIIEACLISVITSIISFGLPLLRQCTPCPKIDPELGNECPKPPGVYGNYVNFYCSKDNEYNDLATIFFNTQDDAIRNLFSAKTMHEFSARSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGKFVVSFYKKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLISKAVGDAFNEGLYEEQAQLRGIPLLESRPKYQMRKITAKEACGKRVVSFPRVVKVADVVSILRSNRHNGFPVIDYSRNGETRVIGLMLRSYLLALLQSKVDFQHSPLPSDTRGSISTRHNFSEFVKPASSKGISIDDIHLSSEDLEMYIDLLPYLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPRPSNVVGLITRKDLLIEDSEDSDALELQSTSSSASR | 770 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 33569880 | 33578699 | + | Sed0013775.1 | Sed04g1887 | 710490 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g1887 | 770 | Pfam | CBS domain | 703 | 750 | IPR000644 | - | |
| Sed04g1887 | 770 | Pfam | Voltage gated chloride channel | 130 | 552 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed04g1887 | 770 | ProSiteProfiles | CBS domain profile. | 702 | 759 | IPR000644 | - | |
| Sed04g1887 | 770 | SUPERFAMILY | CBS-domain pair | 577 | 749 | IPR046342 | - | |
| Sed04g1887 | 770 | Gene3D | Clc chloride channel | 68 | 573 | - | - | |
| Sed04g1887 | 770 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 593 | 749 | - | - | |
| Sed04g1887 | 770 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 27 | 758 | IPR051280 | GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Sed04g1887 | 770 | PRINTS | Chloride channel signature | 521 | 540 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed04g1887 | 770 | PRINTS | Chloride channel signature | 503 | 519 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed04g1887 | 770 | PRINTS | Chloride channel signature | 559 | 573 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed04g1887 | 770 | PRINTS | Chloride channel signature | 237 | 256 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed04g1887 | 770 | PRINTS | Chloride channel signature | 142 | 159 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed04g1887 | 770 | PRINTS | Chloride channel signature | 468 | 488 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed04g1887 | 770 | PRINTS | Chloride channel signature | 173 | 192 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed04g1887 | 770 | PRINTS | Plant CLC chloride channel signature | 272 | 282 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed04g1887 | 770 | PRINTS | Plant CLC chloride channel signature | 48 | 56 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed04g1887 | 770 | PRINTS | Plant CLC chloride channel signature | 420 | 436 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed04g1887 | 770 | PRINTS | Plant CLC chloride channel signature | 290 | 297 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed04g1887 | 770 | PRINTS | Plant CLC chloride channel signature | 258 | 266 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed04g1887 | 770 | FunFam | Chloride channel protein | 660 | 751 | - | - | |
| Sed04g1887 | 770 | SMART | cbs_1 | 705 | 753 | IPR000644 | - | |
| Sed04g1887 | 770 | SMART | cbs_1 | 592 | 644 | IPR000644 | - | |
| Sed04g1887 | 770 | CDD | ClC_6_like | 43 | 572 | - | - | |
| Sed04g1887 | 770 | ProSiteProfiles | CBS domain profile. | 589 | 649 | IPR000644 | - | |
| Sed04g1887 | 770 | SUPERFAMILY | Clc chloride channel | 52 | 574 | IPR014743 | - | |
| Sed04g1887 | 770 | Gene3D | - | 574 | 756 | IPR046342 | - | |
| Sed04g1887 | 770 | FunFam | Chloride channel ClC3 | 66 | 383 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g1887 | Sed-Chr4:33569880 | Sed13g1106 | Sed-Chr13:10076534 | 2.10E-187 | dispersed | |
| Sed04g1887 | Sed-Chr4:33569880 | Sed04g1888 | Sed-Chr4:33569880 | 0.00E+00 | tandem | |
| Sed04g1887 | Sed-Chr4:33569880 | Sed09g0770 | Sed-Chr9:14987461 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g1887 | K05016 | - | csv:101215989 | 1429.08 |