Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1888 ATGCTGTCGAATCAACTTCAAAATGGGATGGACAGAGCAATGAACGTGTGGTCCCGGATTCCGAACGCCGACGAAGACGAGGACGATCGTGTCGGGTTCTTGAAGAAGAATGATGGGTTTGGCGTCGAAAGCCTTGATTACGAGGTTATCGAGAATTATGCTTACTGGGATGAGCAGGCTAAAAGAGGGAAATTATTTATTGGCTATAGCGTGGTAGTTAAGTGGCTGTATGCTTTGCTCATTGGCATTGGCACAGGATTGGCTGCAGTTTTCATAAATATGGCTGTTGAGAACTTTGCTGGGTGGAAATTTTCATTGACATTTTCCCTAATTCAAAAGTCATATGTGGCTGGTTTTATAGTATACTTAGCAATCAACTTGGTCCTAGTATTATCATCTGTATATATAGTCACAAACTTTGCTCCCGCAGCAGCTGGGTCTGGCATACCTGAAATCAAGGGTTATTTGAATGGAATTGACATTCATGGCGTCCTTTTCTTCAGAACCCTAATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGTGGATTGGCTTTAGGCAAGGAAGGGCCTCTTGTACATACTGGAGCCTGTATTGCTTCTTTGTTAGGACAAGGTGGTTCTGGTAAATATCATCTTAATTCCAGATGGCTACAAGTGTTCAAGAGTGACCGGGATCGTCGTGATCTTGTGACCTGTGGGTGTGCAGCAGGAGTCGCTGCAGCTTTTAGAGCTCCAGTTGGTGGTGTATTGTTTGCATTGGAAGAAGTAACATCGTGGTGGAAGAGTCAACTTTTGTGGCGTGTGTTTTTTACTTCTGCTGTCGTGGCTGTTGTGGTGCGTGCAGCTATGGGATGGTGTAAGAGTGGAAAGTGTGGACATTTTGGTTCGGGTGGTTTCATAATATGGGACATATCAGATGGCCAAGAGGATTACTCTTTTGGGGAGTTGTTGCCCATGGCTGTGATTGGGGTTATAGGAGGCTTATTAGGAGCACTATTCAACCAGCTTACTCTTTACATGACTTATTGGCGACGAAACCATTTGCACAAGAAAGGAAACCGAGTCAAGATCATTGAGGCTTGTCTGATATCAGTAATAACATCAATTATTTCCTTCGGACTGCCACTTCTAAGGCAATGTACTCCATGCCCTAAAATTGATCCTGAATTGGGTAATGAATGCCCAAAGCCTCCAGGGGTGTATGGGAATTATGTTAATTTTTACTGCAGTAAAGACAATGAATACAATGACCTTGCAACCATTTTCTTCAACACCCAGGATGATGCAATAAGGAATTTGTTCAGTGCAAAAACAATGCATGAATTCAGTGCACGGAGTTTATTGACCTTTTTGGTTATGTTTTATACATTAGCTGTCGTGACATTTGGTACTGCAGTTCCTGCTGGTCAATTTGTTCCTGGTATAATGATTGGATCTACATATGGACGTTTGGTTGGCAAGTTTGTGGTTAGTTTCTACAAGAAACCCAACATTGAAGAGGGAACATATGCTTTGTTGGGTGCTGCATCTTTTCTCGGAGGTTCTATGCGAATGACTGTGTCTCTGTGTGTCATCATGGTTGAAATTTCAAACAATTTGAAATTTCTACCTCTCATCATGCTTGTTCTTCTGATTTCCAAGGCTGTTGGCGATGCCTTCAATGAAGGCCTATATGAAGAGCAGGCTCAACTGAGGGGTATTCCATTGCTGGAATCAAGACCAAAGTACCAGATGCGGAAGATTACAGCAAAGGAGGCCTGTGGAAAAAGGGTTGTCTCCTTCCCCCGCGTTGTTAAGGTTGCTGATGTTGTTAGTATTTTGCGGAGCAACAGACATAATGGCTTTCCTGTGATTGATTACTCAAGAAATGGAGAAACGCGTGTCATCGGACTGATGCTTAGAAGTTACTTGTTAGCACTTCTGCAGTCTAAAGTAGATTTTCAGCACAGTCCTTTGCCTTCTGATACAAGAGGATCCATATCAACCAGGCACAATTTCAGTGAATTTGTGAAGCCTGCATCCAGTAAAGGAATTTCTATTGATGATATACATCTTAGTTCAGAAGACTTGGAAATGTACATTGATCTGCTCCCGTATTTGAATCCTTCTCCTTATATTGTCCCAGAAGATATGTCTTTGACAAAGGTATATAATCTTTTCCGGCAACTAGGTCTGAGACACGCATTTGTCGTTCCTCGTCCATCAAATGTGGTTGGTTTAATAACTAGAAAGGATTTGTTGATAGAGGATAGTGAAGACTCAGATGCATTGGAACTACAATCGACAAGTGTAAGAGCTCGGCATCGAGATAGAGGAATACATACGAGGAGTGGGGATGTAGAGAGCCCACTTCTTCATGGACTTCTGGTGAATAACACAGACAACTGA 2394 42.48 MLSNQLQNGMDRAMNVWSRIPNADEDEDDRVGFLKKNDGFGVESLDYEVIENYAYWDEQAKRGKLFIGYSVVVKWLYALLIGIGTGLAAVFINMAVENFAGWKFSLTFSLIQKSYVAGFIVYLAINLVLVLSSVYIVTNFAPAAAGSGIPEIKGYLNGIDIHGVLFFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSGKYHLNSRWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWKSQLLWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFGELLPMAVIGVIGGLLGALFNQLTLYMTYWRRNHLHKKGNRVKIIEACLISVITSIISFGLPLLRQCTPCPKIDPELGNECPKPPGVYGNYVNFYCSKDNEYNDLATIFFNTQDDAIRNLFSAKTMHEFSARSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGKFVVSFYKKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLISKAVGDAFNEGLYEEQAQLRGIPLLESRPKYQMRKITAKEACGKRVVSFPRVVKVADVVSILRSNRHNGFPVIDYSRNGETRVIGLMLRSYLLALLQSKVDFQHSPLPSDTRGSISTRHNFSEFVKPASSKGISIDDIHLSSEDLEMYIDLLPYLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPRPSNVVGLITRKDLLIEDSEDSDALELQSTSVRARHRDRGIHTRSGDVESPLLHGLLVNNTDN 797
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 33569880 33578699 + Sed0013775.2 Sed04g1888 710491
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1888 797 SUPERFAMILY CBS-domain pair 577 749 IPR046342 -
Sed04g1888 797 PRINTS Plant CLC chloride channel signature 272 282 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Sed04g1888 797 PRINTS Plant CLC chloride channel signature 420 436 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Sed04g1888 797 PRINTS Plant CLC chloride channel signature 48 56 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Sed04g1888 797 PRINTS Plant CLC chloride channel signature 258 266 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Sed04g1888 797 PRINTS Plant CLC chloride channel signature 290 297 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Sed04g1888 797 ProSiteProfiles CBS domain profile. 702 759 IPR000644 -
Sed04g1888 797 CDD CBS_pair_voltage-gated_CLC_euk_bac 593 749 - -
Sed04g1888 797 Gene3D Clc chloride channel 68 573 - -
Sed04g1888 797 Pfam CBS domain 703 750 IPR000644 -
Sed04g1888 797 FunFam Chloride channel protein 660 751 - -
Sed04g1888 797 SMART cbs_1 705 753 IPR000644 -
Sed04g1888 797 SMART cbs_1 592 644 IPR000644 -
Sed04g1888 797 SUPERFAMILY Clc chloride channel 52 574 IPR014743 -
Sed04g1888 797 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 27 758 IPR051280 GO:0015108(PANTHER)|GO:0043231(PANTHER)
Sed04g1888 797 CDD ClC_6_like 43 572 - -
Sed04g1888 797 PRINTS Chloride channel signature 468 488 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g1888 797 PRINTS Chloride channel signature 559 573 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g1888 797 PRINTS Chloride channel signature 237 256 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g1888 797 PRINTS Chloride channel signature 503 519 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g1888 797 PRINTS Chloride channel signature 142 159 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g1888 797 PRINTS Chloride channel signature 521 540 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g1888 797 PRINTS Chloride channel signature 173 192 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g1888 797 ProSiteProfiles CBS domain profile. 589 649 IPR000644 -
Sed04g1888 797 Gene3D - 574 756 IPR046342 -
Sed04g1888 797 Pfam Voltage gated chloride channel 130 552 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g1888 797 FunFam Chloride channel ClC3 66 383 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1888 Sed-Chr4:33569880 Sed09g0770 Sed-Chr9:14987461 0.00E+00 dispersed
Sed04g1887 Sed-Chr4:33569880 Sed04g1888 Sed-Chr4:33569880 0.00E+00 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1888 K05016 - csv:101215989 1474.91