Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1901 ATGGCCATTTCTTCTCGACTAATACTTCTCCTCCTTTGCTCTTTCATCCCTCCCATCTTCTCTCACCCTTTGGACCCACTTTCACCAACTGAAATAGAGGCAGTTGCCGCCATTATCAAAGCTTCCAAGCTCGGTCGGTCGTCGAGCCTCACGTTCCATTACGTCGCCATAGATGAGCCAAGCAAACCAGCCGTCCTTGCATGGATTTCAAATCCTTTCAAACTCCAACCACCGCCCCGTCGAGCCTTCGCCATAGTTAGAGCTGAAGGACAAAGTCATGAACTCGTCGTTGACTTACACGACAATCAGACCATCTCCCATAAAATCTATACTGGCAGTGGCTATCCATTGCTCAACATCGAGGAGCAAGTAAGGGCGACCGAGCTCGCGCTGAAACACGAGCCAGCGGTCGCATCGATCAAGAAGAGGGGGCTGAAAGTGTCAGAGGTGGTGGCTTCAACTTTCACCATGGGATGGTTTGGTGAAGCAGAGACAAAGAGGTTGATAAAGATTCTATACTTTTACAAAGAAGGGTCACCAAATATTTGGGTAAGGCCCATTGAGGGGATTCAAGCTGTGGTGGATTTTGATAAAATGGAGGTTGTTGAGTTCAGAGATCGCCAAGTTCTTCCTCTACCGAAACCCGACGGCACCGATTACAGAGCCGCCGTGTTTCAGCCGCCGTTTGTGGCGGAGACGAAGCCCATCACTGTTTACCAACCGGAAGGTCCTACCTTTAACATTAATGGCCATGAAATAAGGTGGGCGAACTGGGAATTTCACATAGGCTTCGACGTTCGAGCAGGAATTGTAATATCATCGGCGTCGATCGGCGACGTGGACGAAGGGCGGCGACGGCGAGTGCTGTACAAAGCCCAACTCTCGGAACTGTTCGTCCCCTACCAGGACCCGACGGAGGAATGGTATTACCGGACATTCATGGACGCCGGCGAGTTCGCGATGGGCCTTTCCGCCGTCCAGCTCGAGCCCTTCACGGACTGCCCTGCAAACGCCGTTTTCTTAGACGCCTTCTACGCCGCCCAAGACGGACTTCCCGTCAAAACCCCTAACGCCGTTTGCGTCTTCGAGAAGTACGCCGGCGGGGTTGCTTGGCGCCACACTGAGGCTGCAGTTCCCGGCGAATATATTAGAGAAGTGCGACGAGATGTGAGCTTGGTTGTGAGGATGGTTTCTATGGTGGGCAATTATGATTATATTCTTGATTGGGAGTTCAAGACTTGTGGTTCTATCAAATTTCAGGTAGGTTTAACGGGCATTTTGGAAGGTAAGGCCACAATATACACGCACACAAAAGAGATTAAAGAAGACATATTTGGAACACTGTTAGCACCAAACATAGTTGGCATAAACCACGGCCATTTCCTCACATACTATTTGGATCTGGACGTGGACGGACAACAAAACTCATTTGTCAAAGCCAAGTTAAAGAAGACGGCCGCCGACGACAGCACTCCCAGGAAGAGCTACTGGACCGTCGTGAAGGATACCGCAAAAACCGAACTTGATGCCAGACTCCGGCTAACGGAGCCGGCCGAATATTTGATTGTCAACCAGAACAAAGAAACTGGGGTCGGGAATCAAGTGGCGTACCGCCTGATTCCGGGCCCGGATGCTCCGTCGCTGCTCGCAGCGGATGACTACCCGCAGATCCGAGGGGCGTTGTCCGATTATAGTATTTGGGTTACTCCTTATAATAGATCGGAAATTTGGGCTGCTGGACTTTATGCTGATCGGAACCCAGGTGATGATACTTTGAAAGTTTGGACAGACAGGTACAAAATTCATTCTTAG 1812 50.55 MAISSRLILLLLCSFIPPIFSHPLDPLSPTEIEAVAAIIKASKLGRSSSLTFHYVAIDEPSKPAVLAWISNPFKLQPPPRRAFAIVRAEGQSHELVVDLHDNQTISHKIYTGSGYPLLNIEEQVRATELALKHEPAVASIKKRGLKVSEVVASTFTMGWFGEAETKRLIKILYFYKEGSPNIWVRPIEGIQAVVDFDKMEVVEFRDRQVLPLPKPDGTDYRAAVFQPPFVAETKPITVYQPEGPTFNINGHEIRWANWEFHIGFDVRAGIVISSASIGDVDEGRRRRVLYKAQLSELFVPYQDPTEEWYYRTFMDAGEFAMGLSAVQLEPFTDCPANAVFLDAFYAAQDGLPVKTPNAVCVFEKYAGGVAWRHTEAAVPGEYIREVRRDVSLVVRMVSMVGNYDYILDWEFKTCGSIKFQVGLTGILEGKATIYTHTKEIKEDIFGTLLAPNIVGINHGHFLTYYLDLDVDGQQNSFVKAKLKKTAADDSTPRKSYWTVVKDTAKTELDARLRLTEPAEYLIVNQNKETGVGNQVAYRLIPGPDAPSLLAADDYPQIRGALSDYSIWVTPYNRSEIWAAGLYADRNPGDDTLKVWTDRYKIHS 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33742613 33752331 + Sed0003906.4 Sed04g1901 710504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1901 603 PANTHER COPPER AMINE OXIDASE 21 598 IPR000269 GO:0005507(PANTHER)|GO:0005507(InterPro)|GO:0008131(PANTHER)|GO:0008131(InterPro)|GO:0009308(PANTHER)|GO:0009308(InterPro)|GO:0048038(InterPro)
Sed04g1901 603 SUPERFAMILY Amine oxidase N-terminal region 19 115 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Sed04g1901 603 FunFam Amine oxidase 20 116 - -
Sed04g1901 603 SUPERFAMILY Amine oxidase catalytic domain 226 597 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Sed04g1901 603 Pfam Copper amine oxidase, N3 domain 117 210 IPR015802 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Sed04g1901 603 SUPERFAMILY Amine oxidase N-terminal region 114 221 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Sed04g1901 603 Gene3D - 117 210 - -
Sed04g1901 603 Pfam Copper amine oxidase, enzyme domain 237 598 IPR015798 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Sed04g1901 603 Pfam Copper amine oxidase, N2 domain 22 108 IPR015800 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Sed04g1901 603 Gene3D Copper amine oxidase, catalytic domain 229 602 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Sed04g1901 603 Gene3D - 20 116 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1901 K00276 - - csv:101222468 767.303
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1899 Sed-Chr4:33742613 Sed04g1901 Sed-Chr4:33742613 0.00E+00 dispersed
Sed04g1901 Sed-Chr4:33742613 Sed04g1903 Sed-Chr4:33765337 4.30E-175 dispersed
Sed04g1900 Sed-Chr4:33742613 Sed04g1901 Sed-Chr4:33742613 0.00E+00 tandem
Sed04g1901 Sed-Chr4:33742613 Sed04g1902 Sed-Chr4:33753652 2.90E-187 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g482 . . . . . . Bma04g00787 . . Cmo17g00226 . . . . . . . . . . . . . . Cla06g00578 Cam06g0616 Cec06g0617 Cco06g0623 Clacu06g0603 Cmu06g0596 Cre06g1365 . . . . . . Chy05g00402 . . . . . . . . . Sed04g1901 . . . Cma17g00240 . . . Cpe17g00145 Bhi12g01715 Tan06g2526 Cmetu05g0015 Lac12g2287 Hepe03g0192 . Lcy13g0277 . . . . . . . Lsi09g01325 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97