Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1904 ATGAATGGTGCTACAACAACAAGCTCCGAATATGTCGAAGTTGATCCCACCGGAAGATATGGAAGATACAATGAAGTTCTTGGCAAAGGAGCTTCCAAGACAGTTTACCGAGGCTTCGATGAATACGATGGCATTGAAGTGGCGTGGAATCAAGTGAAGCTTTGTGATTTTCTTCAAACCCCTGAAGATCTCGAGCGGCTGTACAGAGAAATCCATTTGTTGAAGACTTTAAATCACAACAACATTATGAAATTCTATTCCTCTTGGGTTGACACTGTGAATAGAAACATCAACTTTGTGACAGAAATGTTCACTTCTGGGACTCTTCGACAATACAGGCTGAAGCACAAGAAAGTCAGCATCAGAGCTGTGAAGCATTGGTGCAGACAGATTTTGAGAGGTCTTCTCTATCTTCATAGCCATAACCCGCCTGTAATCCATAGAGATCTTAAATGTGATAATATTTTTGTTAATGGGAATCAAGGGGAAGTTAAAATTGGTGATCTTGGTCTTGCTGCTATTCTTCGTAAATCCTATGTTGCCCGATGTGTCGGAACGCCGGAGTTTATGGCTCCGGAGATTTATGAAGAGGAGTATAATGAACTGGTTGATATCTATTCTTTTGGGATGTGCCTTTTGGAGATGGTTACTTTTGAGTATCCATATAGTGAATGCAACCATCCTGCACAGATTTACAAGAAAGTTATCTCTGGGAAGAAACCAGATGCTTTGTATAAGGTAAAGGATCTCGAGGTTCGATATTTCGTCGAGAAATGCTTGGCTACTGTATCGACTAGACTCTCTGCTAGGGAGCTTTTGAATGATCCTTTTCTTCAAATTGATGGTTGTGATTCCTTGCTGAGGCCATTAGACCACTATTTAGAATCTGATCAAGTGAGCAATTCCCTCTTTAGAGGGCCTCTTTATGGACCTCCTCATGGTACTTTGGCTAATGGATATGTGAATTATTTTGGTCACGAGGCTGGGAATGTCTTGGATTACTGTCCGATCGATACCGAGGCGAGCGAGATTGGTCTCTTCTCTGGTCAAGAGGATGAGCATTTGGCAGATGTTGACATCACTATTAAAGGGAAAAGAAGTGGCGATGGCGATATATTTCTACGACTTCGAATTGCAGATAAAGAAGGTCGGATTCGAAACATCTACTTCCCTTTTGATTTGGAGAATGACAGCTCTTTGAGTGTTGCAAATGAGATGGTTACTGAGCTTGACATAACTGATCAAGATGTGAAGAAGATTGCTGATATGATAGATGGGGAAATTGCTACATTGGTGCCAGAATGGAAGGGGGGAACAAGCTTAAAGGAAACTCCAGATTGCACAGATTCTAATGTTTGTTACAATTGTTCTTTAAACAGTAATATTTTGGATTACGCTTCGCCGCATAATCCCGCAACGAAGAATCTGCACATTCTTCGGTGTTCTGAAGAACAAGGTTGTGCTTCCACTCATGGCCGTTTTGAAGAGATCACATATCAATTTGAAGGGTCAGAACAATTCAATGGGGAAGAAAAATTGCATAGAACATCAGAGAATTTGGGCAATATCCATTTCACTGATATTTGGGCGCAACGAGATGGACAAGAGATCGATTCACATGGATATGGAGATGCCAGTTGCAACGAATCACATGGAACGCCGGAGCAGCCGAAACTCGAGAAGGAAGGAAGAACTGTGAATAACAATCATCAAACAGAATACCAAACAAGAAACTCTAGCTCATCAAAGCCTTTGATGTCCTTGGCCGATGATCACGAGAACGAAATTCGACAAGAACTCAGATGGCTCAAGGCTAAATATCAAATGCAGTTGAGGGAGCTAAGGGATCAACAATTAGGGGTAAAAACCAAATCCTTTAGCTTGCAACCGAATCCCGACAACATCAATACCAACAACGGAGCTTTGGTATCTTTGCTGTCACCAAACTTCAATGAAGAAATAAACAAGGATCTCCTAGCATCTCTCTCCTTTGGCAAGAACGCCACTTCACATTCCCCCCATGTCACTATTTCGGAGAACCAAACCTTCCAAGACAAAAACATCGCCGACGAGTCGAGTAGTCCCGAGTTGATGTTTACTGCCAAGAGTTTCTATACAGGAGCATCGTTTCCACATTCTCTTCAAAGAGCAACCTCCCTTCCTGTTGATGCCATAGATTTTTAG 2184 41.94 MNGATTTSSEYVEVDPTGRYGRYNEVLGKGASKTVYRGFDEYDGIEVAWNQVKLCDFLQTPEDLERLYREIHLLKTLNHNNIMKFYSSWVDTVNRNINFVTEMFTSGTLRQYRLKHKKVSIRAVKHWCRQILRGLLYLHSHNPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSYVARCVGTPEFMAPEIYEEEYNELVDIYSFGMCLLEMVTFEYPYSECNHPAQIYKKVISGKKPDALYKVKDLEVRYFVEKCLATVSTRLSARELLNDPFLQIDGCDSLLRPLDHYLESDQVSNSLFRGPLYGPPHGTLANGYVNYFGHEAGNVLDYCPIDTEASEIGLFSGQEDEHLADVDITIKGKRSGDGDIFLRLRIADKEGRIRNIYFPFDLENDSSLSVANEMVTELDITDQDVKKIADMIDGEIATLVPEWKGGTSLKETPDCTDSNVCYNCSLNSNILDYASPHNPATKNLHILRCSEEQGCASTHGRFEEITYQFEGSEQFNGEEKLHRTSENLGNIHFTDIWAQRDGQEIDSHGYGDASCNESHGTPEQPKLEKEGRTVNNNHQTEYQTRNSSSSKPLMSLADDHENEIRQELRWLKAKYQMQLRELRDQQLGVKTKSFSLQPNPDNINTNNGALVSLLSPNFNEEINKDLLASLSFGKNATSHSPHVTISENQTFQDKNIADESSSPELMFTAKSFYTGASFPHSLQRATSLPVDAIDF 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33788917 33792193 + Sed0019922.1 Sed04g1904 710507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1904 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1904 727 MobiDBLite consensus disorder prediction 539 585 - -
Sed04g1904 727 FunFam probable serine/threonine-protein kinase WNK9 104 283 - -
Sed04g1904 727 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 8 617 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Sed04g1904 727 ProSiteProfiles Protein kinase domain profile. 21 278 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1904 727 Gene3D - 370 457 - -
Sed04g1904 727 Gene3D Phosphorylase Kinase; domain 1 5 102 - -
Sed04g1904 727 MobiDBLite consensus disorder prediction 568 585 - -
Sed04g1904 727 Gene3D Transferase(Phosphotransferase) domain 1 104 283 - -
Sed04g1904 727 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 373 428 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Sed04g1904 727 CDD STKc_WNK 19 278 - -
Sed04g1904 727 Coils Coil 597 617 - -
Sed04g1904 727 SMART serkin_6 21 278 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1904 727 FunFam Probable serine/threonine-protein kinase WNK1 6 102 - -
Sed04g1904 727 SUPERFAMILY Protein kinase-like (PK-like) 15 279 IPR011009 -
Sed04g1904 727 Pfam Protein kinase domain 24 278 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1904 Sed-Chr4:33788917 Sed09g0760 Sed-Chr9:14561273 5.9e-314 dispersed
Sed04g1904 Sed-Chr4:33788917 Sed04g1905 Sed-Chr4:33788917 0.00E+00 tandem
Sed01g1621 Sed-Chr1:11779009 Sed04g1904 Sed-Chr4:33788917 5.90E-140 transposed
Sed08g1632 Sed-Chr8:31481504 Sed04g1904 Sed-Chr4:33788917 1.10E-214 transposed
Sed04g1904 Sed-Chr4:33788917 Sed09g0759 Sed-Chr9:14561273 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79015 PF00069 Pkinase 6.20E-50 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1904 K08867 - csv:101210511 1202.19