Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1905 ATGAATGGTGCTACAACAACAAGCTCCGAATATGTCGAAGTTGATCCCACCGGAAGATATGGAAGATACAATGAAGTTCTTGGCAAAGGAGCTTCCAAGACAGTTTACCGAGGCTTCGATGAATACGATGGCATTGAAGTGGCGTGGAATCAAGTGAAGCTTTGTGATTTTCTTCAAACCCCTGAAGATCTCGAGCGGCTGTACAGAGAAATCCATTTGTTGAAGACTTTAAATCACAACAACATTATGAAATTCTATTCCTCTTGGGTTGACACTGTGAATAGAAACATCAACTTTGTGACAGAAATGTTCACTTCTGGGACTCTTCGACAATACAGGCTGAAGCACAAGAAAGTCAGCATCAGAGCTGTGAAGCATTGGTGCAGACAGATTTTGAGAGGTCTTCTCTATCTTCATAGCCATAACCCGCCTGTAATCCATAGAGATCTTAAATGTGATAATATTTTTGTTAATGGGAATCAAGGGGAAGTTAAAATTGGTGATCTTGGTCTTGCTGCTATTCTTCGTAAATCCTATGTTGCCCGATGTGTCGGAACGCCGGAGTTTATGGCTCCGGAGATTTATGAAGAGGAGTATAATGAACTGGTTGATATCTATTCTTTTGGGATGTGCCTTTTGGAGATGGTTACTTTTGAGTATCCATATAGTGAATGCAACCATCCTGCACAGATTTACAAGAAAGTTATCTCTGGGAAGAAACCAGATGCTTTGTATAAGGTAAAGGATCTCGAGGTTCGATATTTCGTCGAGAAATGCTTGGCTACTGTATCGACTAGACTCTCTGCTAGGGAGCTTTTGAATGATCCTTTTCTTCAAATTGATGGTTGTGATTCCTTGCTGAGGCCATTAGACCACTATTTAGAATCTGATCAAGTGAGCAATTCCCTCTTTAGAGGGCCTCTTTATGGACCTCCTCATGGTACTTTGGCTAATGGATATGTGAATTATTTTGGTCACGAGGCTGGGAATGTCTTGGATTACTGTCCGATCGATACCGAGGCGAGCGAGATTGGTCTCTTCTCTGGTCAAGAGGATGAGCATTTGGCAGATGTTGACATCACTATTAAAGGGAAAAGAAGTGGCGATGGCGATATATTTCTACGACTTCGAATTGCAGATAAAGAAGGTAAGAAGGATGAATTTCAATATAGCAGAGAAATGGTTATGTTTTGTTGTTTGTGGCTGTTGAGTTTTGATGTGATTATGGCATTCGAACTACCGATAACTGTCGATCGTCTTACAGGTCGGATTCGAAACATCTACTTCCCTTTTGATTTGGAGAATGACAGCTCTTTGAGTGTTGCAAATGAGATGGTTACTGAGCTTGACATAACTGATCAAGATGTGAAGAAGATTGCTGATATGATAGATGGGGAAATTGCTACATTGGTGCCAGAATGGAAGGGGGGAACAAGCTTAAAGGAAACTCCAGATTGCACAGATTCTAATGTTTGTTACAATTGTTCTTTAAACAGTAATATTTTGGATTACGCTTCGCCGCATAATCCCGCAACGAAGAATCTGCACATTCTTCGGTGTTCTGAAGAACAAGGTTGTGCTTCCACTCATGGCCGTTTTGAAGAGATCACATATCAATTTGAAGGGTCAGAACAATTCAATGGGGAAGAAAAATTGCATAGAACATCAGAGAATTTGGGCAATATCCATTTCACTGATATTTGGGCGCAACGAGATGGACAAGAGATCGATTCACATGGATATGGAGATGCCAGTTGCAACGAATCACATGGAACGCCGGAGCAGCCGAAACTCGAGAAGGAAGGAAGAACTGTGAATAACAATCATCAAACAGAATACCAAACAAGAAACTCTAGCTCATCAAAGCCTTTGATGTCCTTGGCCGATGATCACGAGAACGAAATTCGACAAGAACTCAGATGGCTCAAGGCTAAATATCAAATGCAGTTGAGGGAGCTAAGGGATCAACAATTAGGGGTAAAAACCAAATCCTTTAGCTTGCAACCGAATCCCGACAACATCAATACCAACAACGGAGCTTTGGTATCTTTGCTGTCACCAAACTTCAATGAAGAAATAAACAAGGATCTCCTAGCATCTCTCTCCTTTGGCAAGAACGCCACTTCACATTCCCCCCATGTCACTATTTCGGAGAACCAAACCTTCCAAGACAAAAACATCGCCGACGAGTCGAGTAGTCCCGAGTTGATGTTTACTGCCAAGAGTTTCTATACAGGAGCATCGTTTCCACATTCTCTTCAAAGAGCAACCTCCCTTCCTGTTGATGCCATAGATTTTTAG 2301 41.68 MNGATTTSSEYVEVDPTGRYGRYNEVLGKGASKTVYRGFDEYDGIEVAWNQVKLCDFLQTPEDLERLYREIHLLKTLNHNNIMKFYSSWVDTVNRNINFVTEMFTSGTLRQYRLKHKKVSIRAVKHWCRQILRGLLYLHSHNPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSYVARCVGTPEFMAPEIYEEEYNELVDIYSFGMCLLEMVTFEYPYSECNHPAQIYKKVISGKKPDALYKVKDLEVRYFVEKCLATVSTRLSARELLNDPFLQIDGCDSLLRPLDHYLESDQVSNSLFRGPLYGPPHGTLANGYVNYFGHEAGNVLDYCPIDTEASEIGLFSGQEDEHLADVDITIKGKRSGDGDIFLRLRIADKEGKKDEFQYSREMVMFCCLWLLSFDVIMAFELPITVDRLTGRIRNIYFPFDLENDSSLSVANEMVTELDITDQDVKKIADMIDGEIATLVPEWKGGTSLKETPDCTDSNVCYNCSLNSNILDYASPHNPATKNLHILRCSEEQGCASTHGRFEEITYQFEGSEQFNGEEKLHRTSENLGNIHFTDIWAQRDGQEIDSHGYGDASCNESHGTPEQPKLEKEGRTVNNNHQTEYQTRNSSSSKPLMSLADDHENEIRQELRWLKAKYQMQLRELRDQQLGVKTKSFSLQPNPDNINTNNGALVSLLSPNFNEEINKDLLASLSFGKNATSHSPHVTISENQTFQDKNIADESSSPELMFTAKSFYTGASFPHSLQRATSLPVDAIDF 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33788917 33792193 + Sed0019922.2 Sed04g1905 710508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1905 766 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g1905 766 SUPERFAMILY Protein kinase-like (PK-like) 15 279 IPR011009 -
Sed04g1905 766 Coils Coil 636 656 - -
Sed04g1905 766 Gene3D Phosphorylase Kinase; domain 1 5 102 - -
Sed04g1905 766 Pfam Protein kinase domain 24 278 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1905 766 FunFam probable serine/threonine-protein kinase WNK9 104 283 - -
Sed04g1905 766 MobiDBLite consensus disorder prediction 578 624 - -
Sed04g1905 766 Gene3D Transferase(Phosphotransferase) domain 1 104 283 - -
Sed04g1905 766 FunFam Probable serine/threonine-protein kinase WNK1 6 102 - -
Sed04g1905 766 ProSiteProfiles Protein kinase domain profile. 21 278 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1905 766 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 8 656 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Sed04g1905 766 CDD STKc_WNK 19 278 - -
Sed04g1905 766 Gene3D - 422 475 - -
Sed04g1905 766 MobiDBLite consensus disorder prediction 607 624 - -
Sed04g1905 766 SMART serkin_6 21 278 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1905 Sed-Chr4:33788917 Sed09g0759 Sed-Chr9:14561273 0.00E+00 dispersed
Sed04g1904 Sed-Chr4:33788917 Sed04g1905 Sed-Chr4:33788917 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79016 PF00069 Pkinase 6.90E-50 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1905 K08867 - csv:101210511 1182.93