Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1907 ATGGGGTCGATCCCCGATCCCGGCGAGTTGAGCGAGCCGACTCAGCCGAGTTTCGACGAGTTCCAAAGGCAGGCGTCTCTGATGACGAGCTGTACTCTTCTCTGGAAGGAGCTCTCCGATCATTTCACGAATCTGGAACAAGATCTTCTCAAGAAATCGGAGGCGCTGAGGCATAAAATTCAAACCCTAGATCACCAGACTAAGGACTCTCTCGACGAGCTGGAGAAGCGTGAGGTTAGTATTCAAGGAAGTGTTCAGATCGCGCTTAGTAAGGTCGAGAAAAGCATGGAGGCGGCGCTTAAAACCCTCGAGAAAGACGCCGATGAGAATGGCGAAGTCGATGACGGCGATGGATTGCTGTTGAAGCTGAAATCGTTCTGTTTGGGGATGGATTCTGCTGGATTCTGGAGGTTTATCACTGCTAAGAAGAAGGAATTGGAGGCATTGAGGGAGAAAATTCATCTGGCTTTAGCTGAATGCATAGATCCGCCGAGATTCGTACTGGAAGCCATCTCGGAAGTGTTTCCGCTGGATAAAAGAGTGGAGAAAAGTGATGGAAGCAACGATTTGGGCTGGGCTTGTGTTCTAGTGCTTGAATCTTTGATTCCGGTTGTTGTAGATCCTGTGATCGGGAAGTCTAGGATTTTGGTAACGCCTACCATGAAAGAGCGCGCTAAGGAGATCGCAGAAACTTGGAAGGCGAGCTTGGAAGAGCGAGGTGGAATCGAGAATGTTAGAACACCAGATGTTCATACTTTTTTGCAGCATTTGGTTACTTTTGGGGTTGTGAAGAGGGAGGATGTTGATTTGTATAGAAAGCTTGTGGTCGGATCGGCCTGGCGGAAGCAGATGCCGAAGCTGGCGGTATCACTTGGCCTTGGGGATATAATGCCTGATATGATTGAAGAATTAATCAGCCGGGGTCAGCAGCTTGATGCCGTGCATTTTACTTATGAAGTTGATCTTGTGGATAAGTTCCCCCCTGTTCCACTGCTGAAAGCTTATCTGAAGGATGCAAAAAAATCTGCAGCTGCTATTTCAGAGGACCCAAATAATGCTGGTAGAGCAATGCACCTCGCTGCACGGAAAGAGCAGTCTGCACTAAGAGCTGTTATCAAGTGTATTGAAGAATACAAGCTGCAGGCTGAGTTCCCTCCAGAAAACCTTAAGAAACGCCTTGAACAGCTGGAGAAGGTCAAGGTTGAGAAGAGAAAGCCTGTTGCAGTCCCTGCCAACAAGAGAACACGAGCAAACAATGGCGGTCCTATGCCTCCTGCCAAGGCTGGTCGTTTGACGAATGCATACGTATCTTCATACCCTGCAGCGCCCGCATTTGTCAGGTCTCCCTCGCACTCTCAATACCCTGCCAGTGTCCCACCTTACCATTCCCCACCCTCAATGTATGGCAGCAGAAGCCCACCTACAAATCCTTACACTTACTCGCCAGAAGCTGCTCCACATGCTATATCGTTTACCCCGCCTACAAATCCATACACTTACTCGCCGGAAGCTGCTCCGCATGCTGGATCATTTGCCCCACCTACCAATCCATACAGTTACTCGCCGGAAGCTGCTCCACATTCTGGATCGTTTCCCTCACCTCCTATGTCCTATCCTGCATATGGTGGTTACGGCACAATGGCCCCGGCATATCAACCAGCTTACTACCGATAA 1674 49.4 MGSIPDPGELSEPTQPSFDEFQRQASLMTSCTLLWKELSDHFTNLEQDLLKKSEALRHKIQTLDHQTKDSLDELEKREVSIQGSVQIALSKVEKSMEAALKTLEKDADENGEVDDGDGLLLKLKSFCLGMDSAGFWRFITAKKKELEALREKIHLALAECIDPPRFVLEAISEVFPLDKRVEKSDGSNDLGWACVLVLESLIPVVVDPVIGKSRILVTPTMKERAKEIAETWKASLEERGGIENVRTPDVHTFLQHLVTFGVVKREDVDLYRKLVVGSAWRKQMPKLAVSLGLGDIMPDMIEELISRGQQLDAVHFTYEVDLVDKFPPVPLLKAYLKDAKKSAAAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPPENLKKRLEQLEKVKVEKRKPVAVPANKRTRANNGGPMPPAKAGRLTNAYVSSYPAAPAFVRSPSHSQYPASVPPYHSPPSMYGSRSPPTNPYTYSPEAAPHAISFTPPTNPYTYSPEAAPHAGSFAPPTNPYSYSPEAAPHSGSFPSPPMSYPAYGGYGTMAPAYQPAYYR 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33810830 33814864 + Sed0018003.1 Sed04g1907 710510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1907 557 Pfam Frigida-like protein 121 407 IPR012474 -
Sed04g1907 557 PANTHER FRIGIDA-LIKE PROTEIN 3-RELATED 14 451 - -
Sed04g1907 557 Coils Coil 139 159 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1907 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1907 Sed-Chr4:33810830 Sed09g1016 Sed-Chr9:33226907 9.10E-47 dispersed
Sed04g1907 Sed-Chr4:33810830 Sed07g0275 Sed-Chr7:2200186 5.40E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g502 . . . . . . . . Cmo08g01117 Cmo17g00219 . . . . . . . . . . . . . . Cla06g00587 Cam06g0625 Cec06g0628 Cco06g0633 Clacu06g0612 Cmu06g0605 Cre06g1373 Cone14ag0852 Cone15ag0831 . . . . . . Blo02g00540 . . Bda13g00125 . . Bma02g00849 . Sed04g1907 . . Cma08g01140 Cma17g00231 Car08g01024 Car17g00211 Cpe12g00194 Cpe17g00149 Bhi12g01705 Tan06g2519 Cmetu01g0765 Lac12g2276 Hepe03g0202 . Lcy13g0286 . . . . . . . Lsi09g01317 . . Cme01g01568
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005119 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 1 2 39