Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1935 ATGAGTGCCGGCGCGGCGACGTTCCGGTCTATACTCGACAAACCCCTCAATCAGTTGACGGAGGATGACATTTTGCAGCTCACTCGAGAGGATTGTCGCAAATACCTAAAAGAAAAAGGAATGCGGCGGCCATCGTGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCTCTCAAAGCATTGCTTGAACCTTGTGATGATTCCGGCGCCACCGCTCTCAGGAAGGCCATCGTTTCGCCTCGGGTGAATTTGAATCAAGGCGATTCTCCCAAAGAGCCGAGTGATGATGCTCAGGTTACGTTGTCAGTTGATGAATCTGCGTATAGCAATGTGGAGACTGCGAAATCTACTCCTGAGGATCCACCAGCTGAACCAGACAACAAGGTCACCAGCCCCAGGGATCAATGTGATATGAATGGAGTGGATGACCAAATGACAATTTTCTATTGCGGCAAGGTGAATGTGTATGATGGAATTCCATCAGATAAGGCATCGGCAATCATGCATCTCGCAGCTAGTCCAATTCATTTGCCTCAGAATCACCCATCGGGTGGAGCTGCTGCAGGCTGGTCTCCACCATGTCTTTTGCAGACTGCCAATGAGAGGGATGACTTTTTTTCTCCTAGTGCTGCTATTCATCGAAATATGCATATAGAGAAGATGGTTGAGTACCCTCAGCAGCAGCATGTAAAAGGAAACAGTACTCGAGATTCTGATGTTGAGGGTCAAACGAGTCGAAAAGTTTCATTGCAGAGATATCGTGAAAAGCGAAAAGACAGGGGAAGGTTAAAGAACAAGAAAAATACAGCATTATCTTCTTCTAACCTGGAGGGGTACATGAACCATCAAATGAGGACGCACTTATCCAATAAGAATTTGGGTCTGATTGTGTCAAGCTCTTTATCCCCAACTGGAGTACCAAAAGCCTTCGTTGGAACAGCTGACAATCAGCCGAAACTTGCATGTTTTCCTGTCGACCTTAATGTCAAAGATATCCAAGAATGCTGA 1008 46.33 MSAGAATFRSILDKPLNQLTEDDILQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGATALRKAIVSPRVNLNQGDSPKEPSDDAQVTLSVDESAYSNVETAKSTPEDPPAEPDNKVTSPRDQCDMNGVDDQMTIFYCGKVNVYDGIPSDKASAIMHLAASPIHLPQNHPSGGAAAGWSPPCLLQTANERDDFFSPSAAIHRNMHIEKMVEYPQQQHVKGNSTRDSDVEGQTSRKVSLQRYREKRKDRGRLKNKKNTALSSSNLEGYMNHQMRTHLSNKNLGLIVSSSLSPTGVPKAFVGTADNQPKLACFPVDLNVKDIQEC 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34032431 34037544 + Sed0027490.1 Sed04g1935 710538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1935 335 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
Sed04g1935 335 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 26 263 IPR040390 GO:0005634(PANTHER)|GO:0009611(PANTHER)|GO:0031347(PANTHER)|GO:2000022(PANTHER)
Sed04g1935 335 SMART tify_2 138 173 IPR010399 -
Sed04g1935 335 MobiDBLite consensus disorder prediction 227 270 - -
Sed04g1935 335 MobiDBLite consensus disorder prediction 109 138 - -
Sed04g1935 335 Pfam tify domain 144 172 IPR010399 -
Sed04g1935 335 MobiDBLite consensus disorder prediction 234 256 - -
Sed04g1935 335 Pfam Jas motif 246 260 IPR018467 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1935 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1935 Sed-Chr4:34032431 Sed09g0736 Sed-Chr9:12767038 1.40E-135 dispersed
Sed04g1935 Sed-Chr4:34032431 Sed04g1936 Sed-Chr4:34032431 1.00E-186 tandem
Sed04g1935 Sed-Chr4:34032431 Sed09g0734 Sed-Chr9:12767038 5.90E-158 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g2344 . 1 221 Tify Gene Family AT3G21175 55.7 2.1e-55 213.4
Sed04g2343 . 1 230 Tify Gene Family AT3G21175 53.5 3.3e-53 206.1
Sed04g0199 . 50 294 Tify Gene Family AT4G24470 53.3 3.4e-70 263.1
Sed03g1397 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed03g1399 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed10g1896 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed10g1897 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed04g2344 . 73 264 Tify Gene Family AT4G24470 54.9 6.8e-47 185.7
Sed10g1898 . 87 257 Tify Gene Family AT4G24470 59.0 3.7e-45 179.9
Sed04g2343 . 73 273 Tify Gene Family AT4G24470 52.5 6.4e-45 179.1
Sed04g2344 . 1 286 Tify Gene Family AT1G51600 57.7 1.6e-82 303.9
Sed04g2343 . 1 295 Tify Gene Family AT1G51600 56.4 1.1e-81 301.2
Sed03g1393 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1394 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1395 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1396 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed10g1896 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed10g1897 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed04g0199 . 37 247 Tify Gene Family AT1G51600 53.5 5.9e-48 189.1
Sed10g1898 . 84 257 Tify Gene Family AT1G51600 60.4 1.7e-47 187.6
Sed06g0794 . 62 234 Tify Gene Family AT1G51600 51.1 3.2e-38 156.8
Sed04g0199 . 50 294 Tify Gene Family AT4G24470 53.3 3.4e-70 263.1
Sed03g1397 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed03g1399 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed10g1896 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed10g1897 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed04g2344 . 73 264 Tify Gene Family AT4G24470 54.9 6.8e-47 185.7
Sed10g1898 . 87 257 Tify Gene Family AT4G24470 59.0 3.7e-45 179.9
Sed04g2343 . 73 273 Tify Gene Family AT4G24470 52.5 6.4e-45 179.1
Sed04g2344 . 1 286 Tify Gene Family AT1G51600 57.7 1.6e-82 303.9
Sed04g2343 . 1 295 Tify Gene Family AT1G51600 56.4 1.1e-81 301.2
Sed03g1393 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1394 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1395 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1396 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed10g1896 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed10g1897 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed04g0199 . 37 247 Tify Gene Family AT1G51600 53.5 5.9e-48 189.1
Sed10g1898 . 84 257 Tify Gene Family AT1G51600 60.4 1.7e-47 187.6
Sed06g0794 . 62 234 Tify Gene Family AT1G51600 51.1 3.2e-38 156.8
Sed04g2344 . 1 221 Tify Gene Family AT3G21175 55.7 2.1e-55 213.4
Sed04g2343 . 1 230 Tify Gene Family AT3G21175 53.5 3.3e-53 206.1
Sed09g0734 . 1 180 Tify Gene Family AT4G14713 52.6 4.8e-47 185.7
Sed09g0735 . 1 180 Tify Gene Family AT4G14713 52.6 4.8e-47 185.7
Sed04g1936 . 1 180 Tify Gene Family AT4G14713 51.6 7.1e-43 171.8
Sed04g1935 . 1 180 Tify Gene Family AT4G14713 51.6 7.1e-43 171.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003252 2 5 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38196 PF06200 tify 1.60E-14 No_clan Sed TF