Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1935 ATGAGTGCCGGCGCGGCGACGTTCCGGTCTATACTCGACAAACCCCTCAATCAGTTGACGGAGGATGACATTTTGCAGCTCACTCGAGAGGATTGTCGCAAATACCTAAAAGAAAAAGGAATGCGGCGGCCATCGTGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCTCTCAAAGCATTGCTTGAACCTTGTGATGATTCCGGCGCCACCGCTCTCAGGAAGGCCATCGTTTCGCCTCGGGTGAATTTGAATCAAGGCGATTCTCCCAAAGAGCCGAGTGATGATGCTCAGGTTACGTTGTCAGTTGATGAATCTGCGTATAGCAATGTGGAGACTGCGAAATCTACTCCTGAGGATCCACCAGCTGAACCAGACAACAAGGTCACCAGCCCCAGGGATCAATGTGATATGAATGGAGTGGATGACCAAATGACAATTTTCTATTGCGGCAAGGTGAATGTGTATGATGGAATTCCATCAGATAAGGCATCGGCAATCATGCATCTCGCAGCTAGTCCAATTCATTTGCCTCAGAATCACCCATCGGGTGGAGCTGCTGCAGGCTGGTCTCCACCATGTCTTTTGCAGACTGCCAATGAGAGGGATGACTTTTTTTCTCCTAGTGCTGCTATTCATCGAAATATGCATATAGAGAAGATGGTTGAGTACCCTCAGCAGCAGCATGTAAAAGGAAACAGTACTCGAGATTCTGATGTTGAGGGTCAAACGAGTCGAAAAGTTTCATTGCAGAGATATCGTGAAAAGCGAAAAGACAGGGGAAGGTTAAAGAACAAGAAAAATACAGCATTATCTTCTTCTAACCTGGAGGGGTACATGAACCATCAAATGAGGACGCACTTATCCAATAAGAATTTGGGTCTGATTGTGTCAAGCTCTTTATCCCCAACTGGAGTACCAAAAGCCTTCGTTGGAACAGCTGACAATCAGCCGAAACTTGCATGTTTTCCTGTCGACCTTAATGTCAAAGATATCCAAGAATGCTGA 1008 46.33 MSAGAATFRSILDKPLNQLTEDDILQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGATALRKAIVSPRVNLNQGDSPKEPSDDAQVTLSVDESAYSNVETAKSTPEDPPAEPDNKVTSPRDQCDMNGVDDQMTIFYCGKVNVYDGIPSDKASAIMHLAASPIHLPQNHPSGGAAAGWSPPCLLQTANERDDFFSPSAAIHRNMHIEKMVEYPQQQHVKGNSTRDSDVEGQTSRKVSLQRYREKRKDRGRLKNKKNTALSSSNLEGYMNHQMRTHLSNKNLGLIVSSSLSPTGVPKAFVGTADNQPKLACFPVDLNVKDIQEC 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34032431 34037544 + Sed0027490.1 Sed04g1935 710538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1935 335 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
Sed04g1935 335 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 26 263 IPR040390 GO:0005634(PANTHER)|GO:0009611(PANTHER)|GO:0031347(PANTHER)|GO:2000022(PANTHER)
Sed04g1935 335 SMART tify_2 138 173 IPR010399 -
Sed04g1935 335 MobiDBLite consensus disorder prediction 227 270 - -
Sed04g1935 335 MobiDBLite consensus disorder prediction 109 138 - -
Sed04g1935 335 Pfam tify domain 144 172 IPR010399 -
Sed04g1935 335 MobiDBLite consensus disorder prediction 234 256 - -
Sed04g1935 335 Pfam Jas motif 246 260 IPR018467 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1935 Sed-Chr4:34032431 Sed09g0736 Sed-Chr9:12767038 1.40E-135 dispersed
Sed04g1935 Sed-Chr4:34032431 Sed04g1936 Sed-Chr4:34032431 1.00E-186 tandem
Sed04g1935 Sed-Chr4:34032431 Sed09g0734 Sed-Chr9:12767038 5.90E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38196 PF06200 tify 1.60E-14 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1935 - - - 0.0