Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1952 ATGGATTTCGTCGAGCTGGAGGCGATCGAAGGTCTCCGATGGTCCTGGAACTCCTGGCCGGTCTCCAAACCTGAATCTCTGGCCCTGGTTGTCCCTCTCAGCGTTATGTGCACGCCATTGATGCAATCCATCGAGCTTCCCACAGTTCCGTACGAGCCTCTCTTGTGTCTTCAATGCGGCGCCGTTTTGAACCCCTACGCTCGTGTCGATTACACCTCTCGCATCTGGTTCTGCTCCTTCTGCTCCCACAAAAACTCTTTCCCTCGTTCTTATGCCGATATCGGCGAGACTAATCTTCCGGCGGAGCTCTTCCCGACTTACAGTACGGTGGAGTACGCGCCTGGTCGGAAGATCGAGAGCCCTGTTGCGAATTCGGGTTCTAATATGAATATGAGCCGGAATTGGACCAGAAATCATTCCTTTTCTTCTCTTTCGGTTTCGGGTTCTTCGTCTATTTCGGCTGGAGATTCCCGTGGAAATGGGCCGGCCTTTGTGTTTGTTGTTGATGGTTGTTCGGCGGAGAAGGAGCTTCAAGCACTTAGAAATGAGTTGTTGCTCATTGTCGAGCATTTGCCTGAAAATGCTTTGGTGGGGTTGATTTCTTTTGATTCAATGGTTCGTGTTTATGACCTTAGATTTTCTGAGTGCTCAAGGGTCGTCCTCTTTCCTGGTGAGCGCGAGCTTTCGTCTCATAAGACCCAACTGTTATTGGGGATTTATGGGATGAAGCAGTTGCAGCTGGGGAAGACACCAGTTGTTCCCACACAGGGGTATTTGCTTCCAATATCTGAGTGTGAGTTCAACATCACCACTGCAATTGAAGAGATGAAGACTTCACTGGCGTTACCTGGACATCGACCTAAGAGGGCTACTGGTGCTGCAATATCAGCTGCAGTTGCACTTCTGGAAGGATGCCGAGTGAGTTCTGGTTCTCGTGTGATGGTTTTCACCGCTGGCCCTGCAACTGTAGGTCCGGGGATTGTTGTTGATTCGGATCTTGCTTCCTCCATTAGAACTCACAGGGACATTGTTAATGGTCAGGCACCTTACTTTAGGAAATCTTGTAGTTTCTATGAGGGATTGTCACAGAGGTTGTGTGATGGATCCATTGTTCTTGATTTCTTTGGTTGCTCTCTTGATCAAGTTGGAGCTGCAGAGCTAAAAGTCCCCGTTGAAAACTCTGGTGGATTCATGATGTTAGGAGAGTCATTTGAGTCTAATCAATTCAAAAAGTGCTTGCGGCATGTTTTTAGTCGTGATGAAGATGGTCATCTGAACATGTATTTTGATGCAACTATTGAGTTAGTGACTACAAAAGATGTAAAAATTTGTGGAGCCCTTGGATCTTGTGTATCTCTTCACAAAACTAACAGTTCGGTCAGTGACAATGAAATTGGCGAAGGTGGTACTTACATTTGGAAGCTGAATACACTGTCCAGTAAAACCTGCATTTCCTTTTTCTTCCAAGTGAGTGAAGAGCAGAAAGTTCATCCTGGAACTGCATTCTTCATTCAGTTTATAACACGATACAGAAAAGGAAACTTGGGGGTCCGAAAAAGAGTGACAACTGCTGCTAGGAGATGGGTTGCAAACCCTTCATCAGAAATCAAGGCTGGATTTGATCAAGAAGCAGCAGCTTCGGTGATGGCTAGGCTTGCTATTCATCGAGCAGAGACGTGTTATGCTCGGGATGTTATTAGATGGCTTGATGACACATTGATCCGTTTTTCCTCAAAGTTTGGTGAATATATACAGGAGGATCCTTCGACTTTCCGTTTATCATCCAACTTCTCCTTGTACCCCCAATTCATGTACCACCTTAGAAGGTCTCAGTTTATTGATGTCTTTAACAGTTCTCCTGATGAAACTGCTTTCTACCGAATAATGCTAAACCGAGAGGGAGTCGTCGGTTCTCTTATCATGATACAACCTACTCTTTTCCTCTACTCATTTGATGGACCTCCTGTTCCTGTACTTCTAGACATCCGATCAGTATCTCCAGATGTGATTTTGTTATTTGATTCTTACTTTTATGTTGTTATTCATTATGGATCCAAGGTTGCACAATGGAGGAAGCTTGGTTACGATAAGGATCCAAACCATGAAAACTTGAGAAAGCTATTAGAGGCCCCAGAGCTTGATGCAGAACAACTAATCACCGAACGCATTCCAGTCCCAAAACTTATAAAGTGCGATCAACATAGTAGCCAAGCTCGGTTTCTTCTTGCTAAGTTAAACCCATCTGTTACGCATAACTCAACATACAAGGAGGGATCAGATATAATCTGTACAGATGATTTAAGTTTGGAGGTTTTTATAGAACACCTACAAACTCTTGCAGTGCAGGGCTAA 2352 44.86 MDFVELEAIEGLRWSWNSWPVSKPESLALVVPLSVMCTPLMQSIELPTVPYEPLLCLQCGAVLNPYARVDYTSRIWFCSFCSHKNSFPRSYADIGETNLPAELFPTYSTVEYAPGRKIESPVANSGSNMNMSRNWTRNHSFSSLSVSGSSSISAGDSRGNGPAFVFVVDGCSAEKELQALRNELLLIVEHLPENALVGLISFDSMVRVYDLRFSECSRVVLFPGERELSSHKTQLLLGIYGMKQLQLGKTPVVPTQGYLLPISECEFNITTAIEEMKTSLALPGHRPKRATGAAISAAVALLEGCRVSSGSRVMVFTAGPATVGPGIVVDSDLASSIRTHRDIVNGQAPYFRKSCSFYEGLSQRLCDGSIVLDFFGCSLDQVGAAELKVPVENSGGFMMLGESFESNQFKKCLRHVFSRDEDGHLNMYFDATIELVTTKDVKICGALGSCVSLHKTNSSVSDNEIGEGGTYIWKLNTLSSKTCISFFFQVSEEQKVHPGTAFFIQFITRYRKGNLGVRKRVTTAARRWVANPSSEIKAGFDQEAAASVMARLAIHRAETCYARDVIRWLDDTLIRFSSKFGEYIQEDPSTFRLSSNFSLYPQFMYHLRRSQFIDVFNSSPDETAFYRIMLNREGVVGSLIMIQPTLFLYSFDGPPVPVLLDIRSVSPDVILLFDSYFYVVIHYGSKVAQWRKLGYDKDPNHENLRKLLEAPELDAEQLITERIPVPKLIKCDQHSSQARFLLAKLNPSVTHNSTYKEGSDIICTDDLSLEVFIEHLQTLAVQG 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34198095 34201954 + Sed0000736.1 Sed04g1952 710555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1952 783 Gene3D - 50 108 - -
Sed04g1952 783 SUPERFAMILY vWA-like 162 419 IPR036465 -
Sed04g1952 783 Pfam Sec23/Sec24 zinc finger 53 91 IPR006895 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0008270(InterPro)|GO:0030127(InterPro)
Sed04g1952 783 FunFam Protein transport protein SEC23 161 427 - -
Sed04g1952 783 Gene3D Sec23/Sec24 helical domain 538 780 - -
Sed04g1952 783 FunFam Protein transport protein SEC23 538 649 - -
Sed04g1952 783 Pfam Gelsolin repeat 655 741 IPR007123 -
Sed04g1952 783 Gene3D Severin 643 747 IPR029006 -
Sed04g1952 783 SUPERFAMILY Zn-finger domain of Sec23/24 47 116 IPR036174 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0008270(InterPro)|GO:0030127(InterPro)
Sed04g1952 783 Pfam Sec23/Sec24 beta-sandwich domain 429 529 IPR012990 -
Sed04g1952 783 FunFam Protein transport protein SEC23 426 526 - -
Sed04g1952 783 Gene3D - 418 529 - -
Sed04g1952 783 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 782 IPR037364 GO:0005096(PANTHER)|GO:0030127(PANTHER)|GO:0070971(PANTHER)|GO:0090110(PANTHER)
Sed04g1952 783 Gene3D von Willebrand factor, type A domain 162 417 IPR036465 -
Sed04g1952 783 Pfam Sec23/Sec24 trunk domain 162 416 IPR006896 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Sed04g1952 783 Pfam Sec23/Sec24 helical domain 541 638 IPR006900 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Sed04g1952 783 SUPERFAMILY Helical domain of Sec23/24 541 643 IPR036175 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Sed04g1952 783 CDD Sec23_C 633 753 IPR037550 GO:0030127(InterPro)|GO:0090114(InterPro)
Sed04g1952 783 FunFam Protein transport protein SEC23 643 747 - -
Sed04g1952 783 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 644 782 IPR036180 -
Sed04g1952 783 FunFam Protein transport protein SEC23 50 109 - -
Sed04g1952 783 SUPERFAMILY beta-sandwich domain of Sec23/24 2 540 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1952 K14006 - - csv:101204086 1413.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1952 Sed-Chr4:34198095 Sed12g0705 Sed-Chr12:4226272 1.50E-191 dispersed
Sed04g1952 Sed-Chr4:34198095 Sed02g1076 Sed-Chr2:48101067 3.50E-193 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g606 . Blo12g00355 Bda03g00850 . Bpe04g00804 . Bma04g00750 . . Cmo17g00185 . . . . . . . . . . . . . . Cla06g00627 Cam06g0666 Cec06g0670 Cco06g0675 Clacu06g0653 Cmu06g0646 Cre06g1414 . . . . . Csa02g01104 Chy05g00363 . . . . . . . . . Sed04g1952 . . . Cma17g00189 . Car17g00167 Cpe12g00162 . Bhi12g02260 Tan06g2465 Cmetu05g0430 . Hepe03g0247 . Lcy13g0328 . . . . . . . Lsi09g01277 . . Cme05g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011145 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31