Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1953 ATGGCTCGGGACGGGCTTGTAGTGCCGGTGGATCCACAGGCGGCGGCGTTGACTGTCAAGAAGAAGAAGCAGCCTTCCCGGAATTGGATTCTACTGGACTCTACTGGCCAAGGGACCGTCCTCGATGTCGACAAGTACGCTATTATGCATCGAGTTCAAATCCATGCCAGAGACCTCAGGATTCTCGACCCTTTGCTTTCTTATCCCTCCACCATTCTGGGCCGTGAAAGGGCTATTGTTCTTAATCTTGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTGCTTAGAGATCCCACAGATGAGCATGTCATCCCTGTGGTTGAGGAGCTTCAGAGGCGACTGCCTCCTAATGTCTTCCAGCTTCAAATTCAAGGAGATATGACAGATGACCAGGGTGGGCTACATGATGGTGAAGCTGACGAAGATGAATCCCCATTTGAATTCCGTGCCCTCGAGGTAGCCTTGGAAGCTATATGCAGTTATCTTGCTGCACGGACAACTGAACTGGAGACTGCTGCTTATCCAGCCTTGGATGAGCTTACTACCAAGATTAGTAGCCGCAATTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACCAGGTTGACTGCAAGGGTTCAAAAGGTGAGAGACGAGCTTGAACAATTACTAGACGACGATGATGATATGGCAGACCTTTACTTGTCAAGAAAAATGAGTTCATCTTCTCCTGTAAGTGGTTCTGGTCCTGCCAATTGGTTTCCTGCGTCTCCTACCATTGGTTCAAAGATCTCAAGGGCAAGCAGAGCGAGTATTGCTACAGCACGTGGGGATGAGAATGACGTTGAGGAACTCGAAATGTTACTGGAGGCTTACTTTATGCAGATTGACGGTACATTGAACAAATTAACTACTCTTCGAGAATATATCGATGACACAGAAGATTATATCAATATCCAGCTTGACAATCATCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGTTCTGGAACTGTTTGTATGTCTATCTATTCTTTAGTGACTGCGATATTTGGCATGAACATTCCATACACTTGGAATGACGATCATGGATTCATGTTTAAATGGGTTGTCATTGTTGGTGGAGTCACTTCTGCCGTGCTGTTTGTCGTTATTGTTTACTACGCGCGCCTCAAAGGTTTGGTGGGGTCTTGA 1182 45.77 MARDGLVVPVDPQAAALTVKKKKQPSRNWILLDSTGQGTVLDVDKYAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVLLRDPTDEHVIPVVEELQRRLPPNVFQLQIQGDMTDDQGGLHDGEADEDESPFEFRALEVALEAICSYLAARTTELETAAYPALDELTTKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMSSSSPVSGSGPANWFPASPTIGSKISRASRASIATARGDENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCMSIYSLVTAIFGMNIPYTWNDDHGFMFKWVVIVGGVTSAVLFVVIVYYARLKGLVGS 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34210691 34220260 + Sed0024346.1 Sed04g1953 710556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1953 393 Coils Coil 194 221 - -
Sed04g1953 393 FunFam Magnesium transporter MRS2-1 17 100 - -
Sed04g1953 393 Gene3D - 15 100 - -
Sed04g1953 393 Gene3D Magnesium transport protein CorA, transmembrane region 107 323 - -
Sed04g1953 393 Pfam Magnesium transporter MRS2-like 33 236 - -
Sed04g1953 393 Pfam Magnesium transporter MRS2-like 272 320 - -
Sed04g1953 393 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 16 389 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Sed04g1953 393 CDD Mrs2_Mfm1p-like 29 390 IPR039204 -
Sed04g1953 393 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 329 381 IPR045863 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1953 Sed-Chr4:34210691 Sed06g2048 Sed-Chr6:44545785 1.30E-87 dispersed
Sed04g1953 Sed-Chr4:34210691 Sed05g0080 Sed-Chr5:431442 5.00E-148 wgd
Sed04g1953 Sed-Chr4:34210691 Sed09g0722 Sed-Chr9:11925834 3.40E-189 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1953 K16075 - csv:101203841 647.506