Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1985 ATGAGTCAACAACTGGGAGTGCTGAGCGCACTCGATCTCGCAAAAACTCAATGGTATCATTTCACGGCAATCATCATCGCCGGAATGGGTTTCTTCACCGACGCCTACGATCTCTTCTGCATCTCAATCGTCACCAAACTCCTCGGTCGAATCTATTACCACGTTGAGAACTCCCCTAGACCTGGATCCCTTCCTCCCAACGTCGCCGCCGCCGTCAACGGCGTCGCATTCTGCGGTACCCTCGCCGGCCAACTCTTCTTCGGCTGGCTCGGCGACAAGCTCGGCCGCAAGAAAGTCTACGGCATCACCCTCATTCTCATGGTCGTCTGCTCCATCGCCTCCGGCCTCTCCTTCGGCCACTCCCCAAAAGGCGTCATCGCCACCCTCTGCTTCTTCCGCTTCTGGCTCGGCTTCGGCATCGGCGGCGACTACCCTCTCTCCGCCACCATCATGTCCGAATACGCCAACAAAAAAACCCGCGGCGCCTTCATCGCAGCCGTCTTCGCAATGCAGGGCTTCGGAATCCTAGCGGGAGGAATCGTCTCTTTAATCGTCTCTGCTGCCTTCAACAACCGCTTTCCAGCGCAGCCCTACAACATCGACCCGACTGGCTCCACCATCCCGGAGGCCGATTACGTGTGGCGAATCGTGGTGATGTTCGGCGCAATTCCGGCCGCATTAACTTACTACTGGCGAATGAAAATGCCGGAGACGGCAAGGTACACCGCCTTGGTCGCCAAAAACGGGAAACAAGCTGCGGCCGACATGTCGAAAGTGCTGCAAGTCCATCTCGAAGCAGAAGAAGAAAAAACTAGCATGGAATCGAATCGCAACGGTTTTGGATTATTCTCACGCGAATTCGCCACACGCCATGGGCTCCACTTGGTGGGGACCACCACCACGTGGTTTTTGCTAGACATAGCCTTTTACAGCCAGAATCTCTTCCAGAAGGACATATTCACGGCCATCGAATGGCTTCCGGCGGCGGCGACGATGAGCGGATTAGAAGAATGCTTCAAAATTGCACGAGCTCAAACGCTGATTGCCCTTTGCGGGACGGTTCCGGGGTACTGGTTCACGGTGCTGTTCATCGACTACATCGGAAGATTCATCATTCAACTGATGGGATTCGTGATGATGACCATCTTCATGTTTGCTCTGGCTTTCCCTTACGATCACTGGAGGGAGAAGCCGCATCGAATCGGGTTTGTTGCGTTGTATTCGCTGACGTTCTTCTTCGCGAACTTCGGGCCAAATTCGACAACATTTATAGTGCCGGCGGAGATATTTCCGGCGAGGCTGAGGTCGACGTGCCATGGAATATCGGCGGCGGCCGGGAAAGCAGGGGCGATTGTGGGGGCGTTTGGGTTTTTGTATGCGGCGCAGAGTAAGGATCCAAATCTGACGGATCCGGGTTACCCAGCCGGAATCGGAGTGAAAAATGCATTGATATTGTTGGGATGTGTGAATTTTTTGGGGGCTTTGTTTACTTTGTTGGTGCCTGAATCCAAAGGAAAGTCGCTGGAAGAGTTAACTGGGGAGAATGAACCGGACCACAATGGGAATACAAATGTTTAA 1578 53.87 MSQQLGVLSALDLAKTQWYHFTAIIIAGMGFFTDAYDLFCISIVTKLLGRIYYHVENSPRPGSLPPNVAAAVNGVAFCGTLAGQLFFGWLGDKLGRKKVYGITLILMVVCSIASGLSFGHSPKGVIATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGIVSLIVSAAFNNRFPAQPYNIDPTGSTIPEADYVWRIVVMFGAIPAALTYYWRMKMPETARYTALVAKNGKQAAADMSKVLQVHLEAEEEKTSMESNRNGFGLFSREFATRHGLHLVGTTTTWFLLDIAFYSQNLFQKDIFTAIEWLPAAATMSGLEECFKIARAQTLIALCGTVPGYWFTVLFIDYIGRFIIQLMGFVMMTIFMFALAFPYDHWREKPHRIGFVALYSLTFFFANFGPNSTTFIVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSKDPNLTDPGYPAGIGVKNALILLGCVNFLGALFTLLVPESKGKSLEELTGENEPDHNGNTNV 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34407701 34409278 + Sed0012275.1 Sed04g1985 710588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1985 525 Pfam Sugar (and other) transporter 25 511 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Sed04g1985 525 CDD MFS_PhT 24 504 - -
Sed04g1985 525 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 9 510 - -
Sed04g1985 525 NCBIfam phosphate:H+ symporter 11 514 IPR004738 GO:0005315(InterPro)|GO:0006817(InterPro)|GO:0016020(InterPro)
Sed04g1985 525 ProSiteProfiles Major facilitator superfamily (MFS) profile. 23 505 IPR020846 GO:0022857(InterPro)
Sed04g1985 525 Gene3D MFS general substrate transporter like domains 19 524 IPR036259 -
Sed04g1985 525 SUPERFAMILY MFS general substrate transporter 11 511 IPR036259 -
Sed04g1985 525 FunFam Inorganic phosphate transporter 1-6 19 525 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3031 Sed-Chr1:33200100 Sed04g1985 Sed-Chr4:34407701 1.10E-216 dispersed
Sed04g1985 Sed-Chr4:34407701 Sed13g0089 Sed-Chr13:566724 2.70E-181 dispersed
Sed12g1032 Sed-Chr12:6680763 Sed04g1985 Sed-Chr4:34407701 2.60E-229 wgd
Sed02g1407 Sed-Chr2:50261134 Sed04g1985 Sed-Chr4:34407701 7.70E-253 wgd
Sed04g1985 Sed-Chr4:34407701 Sed05g0108 Sed-Chr5:655102 4.80E-231 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1985 K08176 - csv:101212412 937.947