Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g1996 ATGGAAGCTACCAGGTGTTGGTTTAATAAGTTCAGATCAAAGGACAAGCCAAAGCCTTCGACAAATAAGGAGAGTACAGGTAATGCAAGAGATGCACTGAGAGCACCAACCAGCGAAGAGGCACCCTCAAATGTCACCAAGCAGAAGGCTGCAGCTGCTAAACAGTATATAGAGAACCATTACAAGAAGCAAATGAAAAGCTTGGAAGAAAGGAAGGAGAGACGCCATGTACTAGAAATGAAGTTGGCTGATGCTGAGGTCTCTCAAGAAGAGCAAAGCAACCTGCTTAAGCGTCTAGAGATGAAGGAAACAGAGTATATGCGTCTTCAGAGGCATAAAATGGGTGCTGATGATTTTGAGCCTTTAACAATGATAGGGAGGGGTGCTTTTGGAGAGGTTAGAGTTTGTCGGGAGAAAGCAACTAGCCATGTATATGCCATGAAGAAGCTTAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTTGAACATGTGAAAGCTGAAAGGAACCTGTTGGCGGAGGTTGACAGTAATTGTATTGTAAAGCTATACTGCTCTTTTCAAGATGAAGAGTATTTATATCTTATTATGGAATACTTACCTGGTGGAGATATGATGACTTTGCTGATGAGGAAAGATACTCTAACAGAAGATGAGGCCCGATTTTATGTTGGTGAAACAGTTTTAGCTATCGAGTCAATCCATAAACATAATTATATTCATAGAGATATCAAGCCTGACAACTTGCTTCTTGACAAGGATGGCCATATGAAATTATCAGATTTTGGATTATGTAAACCATTAGATTGTAGTAACCTCCAAGAAAAGGATTTTTCCCAGGGTAGTAACCTTAGTGGTGCTCTTCAAAGTGATGGGCGTCCTGTAGCATCAAAACGCACACAACAAGAACAACTACAGCATTGGCAAAGGAACAGGCGTATGCTTGCTTATTCGACAGTTGGAACTCCTGATTATATTGCTCCGGAAGTTCTGCTGAAGAAAGGATATGGAATGGAATGTGATTGGTGGTCACTCGGTGCCATCATGTATGAAATGCTTGTGGGATATCCACCTTTTTACTCAGACGAGCCAATGTCAACTTGTAGGAAGATAGTTAATTGGAGAACTCATTTGAAATTTCCAGAAGAAGCAAAACTCTCTCCAGAAGCAAAGGATCTAATTAGCAAACTCCTGTGCAATGTTGAACAGAGGCTTGGGACCAAGGGTGCAGATGAAATAAAGGCGCACCCATGGTTCAAGGGCATTGAGTGGGACAAGTTGTATCAAATGAAAGCTGCGTTTATTCCCGAGGTCAATGATGAATTGGATACTCAAAATTTTGAGAAGTTTGAAGAGACTGAGAACTCAATTCAGACATCATCAAAATCAGGTCCATGGAGAAAGATGCTGTCATCGAAGGATGTCAATTTCGTGGGTTACACGTACAAAAACTTTGAAATCATTGACGATAATCAATTACCTGGAATCGCTGAATTGAAGAAGAAGAGCACGAAATGTAAAAGGCCTTCCATCAAATCTCTTTTCGCCACAGATAACGAATCTGCAATGGCGACGAATCAGCCTGTTCAAGGCAGCTTTTTGAAACTCTTGCCTACGCAACTAGAAGTCCCCGAGAAACCGACGAGTGCCAACGAGAAGCATTCATGA 1665 41.68 MEATRCWFNKFRSKDKPKPSTNKESTGNARDALRAPTSEEAPSNVTKQKAAAAKQYIENHYKKQMKSLEERKERRHVLEMKLADAEVSQEEQSNLLKRLEMKETEYMRLQRHKMGADDFEPLTMIGRGAFGEVRVCREKATSHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFSQGSNLSGALQSDGRPVASKRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEETENSIQTSSKSGPWRKMLSSKDVNFVGYTYKNFEIIDDNQLPGIAELKKKSTKCKRPSIKSLFATDNESAMATNQPVQGSFLKLLPTQLEVPEKPTSANEKHS 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34492292 34500620 + Sed0003869.3 Sed04g1996 710599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g1996 554 Coils Coil 82 102 - -
Sed04g1996 554 CDD STKc_NDR_like 117 482 - -
Sed04g1996 554 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524(InterPro)
Sed04g1996 554 FunFam Non-specific serine/threonine protein kinase 203 270 - -
Sed04g1996 554 SMART serkin_6 119 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1996 554 FunFam Non-specific serine/threonine protein kinase 317 436 - -
Sed04g1996 554 MobiDBLite consensus disorder prediction 1 51 - -
Sed04g1996 554 Gene3D Phosphorylase Kinase; domain 1 436 457 - -
Sed04g1996 554 Gene3D Phosphorylase Kinase; domain 1 117 198 - -
Sed04g1996 554 CDD MobB_NDR_LATS-like 53 114 - -
Sed04g1996 554 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1996 554 ProSiteProfiles Protein kinase domain profile. 119 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1996 554 PANTHER SERINE/THREONINE-PROTEIN KINASE 31 485 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Sed04g1996 554 Gene3D Transferase(Phosphotransferase) domain 1 315 435 - -
Sed04g1996 554 Gene3D Transferase(Phosphotransferase) domain 1 199 267 - -
Sed04g1996 554 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1996 554 SMART pkinase_C_6 419 483 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1996 554 FunFam Non-specific serine/threonine protein kinase 90 202 - -
Sed04g1996 554 Pfam Protein kinase domain 121 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1996 554 Pfam Protein kinase domain 315 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g1996 554 MobiDBLite consensus disorder prediction 7 21 - -
Sed04g1996 554 SUPERFAMILY Protein kinase-like (PK-like) 94 471 IPR011009 -
Sed04g1996 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1994 Sed-Chr4:34492292 Sed04g1996 Sed-Chr4:34492292 0.00E+00 dispersed
Sed04g1996 Sed-Chr4:34492292 Sed09g0671 Sed-Chr9:9007675 4.20E-302 dispersed
Sed04g1995 Sed-Chr4:34492292 Sed04g1996 Sed-Chr4:34492292 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79020 PF00069 Pkinase 8.30E-66 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g1996 K08790 - csv:101205120 1069.3