Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2012 ATGGCCGGTGAGCTAGCGGCGGCGGCGGCGGCGGATGTAGCCGATTCCAGTCAACAGTCCCACAAATTGGAGAGACAATGGACCTTTTGGTTCGACAACCAATCGAGGCCGAAGCAAGGTGCCGCTTGGGGCACCTCTCTTCGAAAGGTCTATACCTTCGACACCGTCGAAGAATTTTGGTGTTTGTGCGATCAGATATTCAAGCCGAGCAAGTTGGTGTGTAATGCAGATTTTCACTTGTTCAAATCTGGGGTTGAGCCGAAATGGGAAGATCCTGAGTGCGCGAATGGAGGAAAATGGAGTGTCACCAGCAGTAGAAAGGCTAACCTCGATAGCATGTGGCTAGAAACGATGATGGCTTTAATTGGAGAACAATTCGATGAGTCCGATGAGATCTGTGGCGTGGTTGCGAGTGTGCGCCAGAGGCAGGACAAACTTGCGCTGTGGACAAAGACAGCAACAAATGAGGCTGCTCAGATGAGCATTGGTAGGAAGTGGAAGGAGGTTATCGACGTTAACGACAAGATTACGTTCAGCTTTCATGAGGATGCGAGGAGGGAAAAGTCAGCAAAATCTAGATACACTGTCTGA 591 50.08 MAGELAAAAAADVADSSQQSHKLERQWTFWFDNQSRPKQGAAWGTSLRKVYTFDTVEEFWCLCDQIFKPSKLVCNADFHLFKSGVEPKWEDPECANGGKWSVTSSRKANLDSMWLETMMALIGEQFDESDEICGVVASVRQRQDKLALWTKTATNEAAQMSIGRKWKEVIDVNDKITFSFHEDARREKSAKSRYTV 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34586625 34589121 - Sed0005286.1 Sed04g2012 710615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2012 196 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 12 189 IPR001040 GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0006413(InterPro)|GO:0016281(PANTHER)
Sed04g2012 196 SUPERFAMILY eIF4e-like 16 189 IPR023398 -
Sed04g2012 196 Pfam Eukaryotic initiation factor 4E 22 178 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Sed04g2012 196 ProSitePatterns Eukaryotic initiation factor 4E signature. 77 100 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
Sed04g2012 196 FunFam Eukaryotic translation initiation factor 4E 12 196 - -
Sed04g2012 196 Gene3D RNA Cap, Translation Initiation Factor Eif4e 11 196 IPR023398 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2194 Sed-Chr1:16491400 Sed04g2012 Sed-Chr4:34586625 1.60E-53 dispersed
Sed04g2012 Sed-Chr4:34586625 Sed09g0220 Sed-Chr9:1733584 1.40E-79 dispersed
Sed12g1050 Sed-Chr12:6856684 Sed04g2012 Sed-Chr4:34586625 1.20E-21 wgd
Sed04g2012 Sed-Chr4:34586625 Sed09g0219 Sed-Chr9:1733584 6.80E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2012 K03259 - csv:101208495 356.681