Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g2012 | ATGGCCGGTGAGCTAGCGGCGGCGGCGGCGGCGGATGTAGCCGATTCCAGTCAACAGTCCCACAAATTGGAGAGACAATGGACCTTTTGGTTCGACAACCAATCGAGGCCGAAGCAAGGTGCCGCTTGGGGCACCTCTCTTCGAAAGGTCTATACCTTCGACACCGTCGAAGAATTTTGGTGTTTGTGCGATCAGATATTCAAGCCGAGCAAGTTGGTGTGTAATGCAGATTTTCACTTGTTCAAATCTGGGGTTGAGCCGAAATGGGAAGATCCTGAGTGCGCGAATGGAGGAAAATGGAGTGTCACCAGCAGTAGAAAGGCTAACCTCGATAGCATGTGGCTAGAAACGATGATGGCTTTAATTGGAGAACAATTCGATGAGTCCGATGAGATCTGTGGCGTGGTTGCGAGTGTGCGCCAGAGGCAGGACAAACTTGCGCTGTGGACAAAGACAGCAACAAATGAGGCTGCTCAGATGAGCATTGGTAGGAAGTGGAAGGAGGTTATCGACGTTAACGACAAGATTACGTTCAGCTTTCATGAGGATGCGAGGAGGGAAAAGTCAGCAAAATCTAGATACACTGTCTGA | 591 | 50.08 | MAGELAAAAAADVADSSQQSHKLERQWTFWFDNQSRPKQGAAWGTSLRKVYTFDTVEEFWCLCDQIFKPSKLVCNADFHLFKSGVEPKWEDPECANGGKWSVTSSRKANLDSMWLETMMALIGEQFDESDEICGVVASVRQRQDKLALWTKTATNEAAQMSIGRKWKEVIDVNDKITFSFHEDARREKSAKSRYTV | 196 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 34586625 | 34589121 | - | Sed0005286.1 | Sed04g2012 | 710615 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g2012 | 196 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED | 12 | 189 | IPR001040 | GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0006413(InterPro)|GO:0016281(PANTHER) | |
Sed04g2012 | 196 | SUPERFAMILY | eIF4e-like | 16 | 189 | IPR023398 | - | |
Sed04g2012 | 196 | Pfam | Eukaryotic initiation factor 4E | 22 | 178 | IPR001040 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro) | |
Sed04g2012 | 196 | ProSitePatterns | Eukaryotic initiation factor 4E signature. | 77 | 100 | IPR019770 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro) | |
Sed04g2012 | 196 | FunFam | Eukaryotic translation initiation factor 4E | 12 | 196 | - | - | |
Sed04g2012 | 196 | Gene3D | RNA Cap, Translation Initiation Factor Eif4e | 11 | 196 | IPR023398 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2194 | Sed-Chr1:16491400 | Sed04g2012 | Sed-Chr4:34586625 | 1.60E-53 | dispersed | |
Sed04g2012 | Sed-Chr4:34586625 | Sed09g0220 | Sed-Chr9:1733584 | 1.40E-79 | dispersed | |
Sed12g1050 | Sed-Chr12:6856684 | Sed04g2012 | Sed-Chr4:34586625 | 1.20E-21 | wgd | |
Sed04g2012 | Sed-Chr4:34586625 | Sed09g0219 | Sed-Chr9:1733584 | 6.80E-98 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g2012 | K03259 | - | csv:101208495 | 356.681 |