Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2044 ATGGCGGAACTTAGCAAATGGCCCTCTCTGTCTCTGCTTGCCCTTGCAATGGTGCTCTTAGTGACATTCGCACTGGTTCGCAAACAAGAAACCTCCGAGATTAGGACTGTGTTAGCGAGGAAGTTTCAGAGCTCAAGCAACTCATCAATGGCGACTAGGTTGGTGAATGATGATTTGGAGGAACTTAACAACGAGCATGCTGTGGATAATCCTGATGAGATTGCTGCCTCTGTTGAGATGAGCATTCGTAACAGCACGGAAAGGAGGAAGTTGGGATTCTTCTCCTGTGAAACTGGCAACCCCATCGATGACTGCTGGCGTTGTGATGCCAATTGGCACCGTAACCGTAAACGCCTTGCCGAATGCGGGATTGGGTTTGGTCGGAATGCTATTGGTGGTCGTGATGGCCGTTTCTATGTCGTTACTGATTCGAGTGACAATGATCCGGTGAATCCGAAGCCGGGGACTCTTCGTCATGCGGTCATTCAAGAGAAACCTCTTTGGATTGTGTTCGAAAGGGACATGGTGATTCAATTGAAACAGGAACTCATTATGAACAGTTTTAAGACGATTGATGCTCGGGGGGTTAATGTACACATTGCTAATGGCGCTTGTATCACAATCCAGTTTGTGACTAACATCATTATCCATGGTCTTCATATCCATGATTGCAAGCCCACAGGGAATGCCATGGTGAGAAGCTCTACAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCAATCTTTGGATCAAGCCATGTATGGATTGATCATAATTCACTCTCTAATTGTGCTGATGGCCTTGTTGATGCTATCATGGGCTCCACTGCAATCACTATCTCCAACAATCACTTCACTCACCACAATGAGGTGATGCTTCTAGGTCATAGTGATTCCTACACAAAAGACAAGCAAATGCAAGTCACCATTGCTTACAACCATTTTGGAAAGGGACTCATTCAAAGAATGCCAAGATGTAGGCATGGATATTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCCATTGGTGGGAGTGCAAACCCCACCATCAATAGTCAAGGCAACAGATATGCTGCTCCAACCAACCGTTTTGCCAAAGAGGTGACAAAGCGAGTAGAAACAGCGGAGAGCGAATGGAAAGGCTGGAACTGGAGATCAGAAGGAGATATGTTACTGAATGGAGCTTATTTCACCCCATCGGGCGCTGGAGCTTCAGCAAGCTATGCCAGAGCCTCCAGCTTAGGAGCCAAATCTGCTTCCATGGTTGGTACCATCACTTCTTCCGCAGGCTCGCTCCCTTGCCGCCGAGGCCGTCCCTGCTAG 1347 47.36 MAELSKWPSLSLLALAMVLLVTFALVRKQETSEIRTVLARKFQSSSNSSMATRLVNDDLEELNNEHAVDNPDEIAASVEMSIRNSTERRKLGFFSCETGNPIDDCWRCDANWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFERDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSTTHFGWRTMADGDAISIFGSSHVWIDHNSLSNCADGLVDAIMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGKGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNRFAKEVTKRVETAESEWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGTITSSAGSLPCRRGRPC 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34840872 34844400 - Sed0017855.1 Sed04g2044 710647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2044 448 PANTHER PECTATE LYASE 18-RELATED 20 445 IPR045032 GO:0030570(InterPro)
Sed04g2044 448 SMART amb_all 174 371 IPR002022 -
Sed04g2044 448 Pfam Pectate lyase 186 363 IPR002022 -
Sed04g2044 448 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Sed04g2044 448 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Sed04g2044 448 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Sed04g2044 448 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Sed04g2044 448 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Sed04g2044 448 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Sed04g2044 448 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Sed04g2044 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Sed04g2044 448 FunFam Pectate lyase 99 441 - -
Sed04g2044 448 SUPERFAMILY Pectin lyase-like 76 442 IPR011050 -
Sed04g2044 448 Gene3D - 99 441 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2037 Sed-Chr3:14287530 Sed04g2044 Sed-Chr4:34840872 1.80E-152 dispersed
Sed04g2044 Sed-Chr4:34840872 Sed12g0410 Sed-Chr12:2470045 3.90E-189 dispersed
Sed01g4237 Sed-Chr1:70681923 Sed04g2044 Sed-Chr4:34840872 3.50E-195 wgd
Sed12g0409 Sed-Chr12:2470045 Sed04g2044 Sed-Chr4:34840872 6.40E-208 wgd
Sed02g1468 Sed-Chr2:50689600 Sed04g2044 Sed-Chr4:34840872 1.10E-215 wgd
Sed04g2044 Sed-Chr4:34840872 Sed05g0178 Sed-Chr5:1087714 6.00E-190 wgd
Sed04g2044 Sed-Chr4:34840872 Sed09g0193 Sed-Chr9:1553900 7.40E-241 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2044 K01728 - csv:101217580 842.802