Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g2044 | ATGGCGGAACTTAGCAAATGGCCCTCTCTGTCTCTGCTTGCCCTTGCAATGGTGCTCTTAGTGACATTCGCACTGGTTCGCAAACAAGAAACCTCCGAGATTAGGACTGTGTTAGCGAGGAAGTTTCAGAGCTCAAGCAACTCATCAATGGCGACTAGGTTGGTGAATGATGATTTGGAGGAACTTAACAACGAGCATGCTGTGGATAATCCTGATGAGATTGCTGCCTCTGTTGAGATGAGCATTCGTAACAGCACGGAAAGGAGGAAGTTGGGATTCTTCTCCTGTGAAACTGGCAACCCCATCGATGACTGCTGGCGTTGTGATGCCAATTGGCACCGTAACCGTAAACGCCTTGCCGAATGCGGGATTGGGTTTGGTCGGAATGCTATTGGTGGTCGTGATGGCCGTTTCTATGTCGTTACTGATTCGAGTGACAATGATCCGGTGAATCCGAAGCCGGGGACTCTTCGTCATGCGGTCATTCAAGAGAAACCTCTTTGGATTGTGTTCGAAAGGGACATGGTGATTCAATTGAAACAGGAACTCATTATGAACAGTTTTAAGACGATTGATGCTCGGGGGGTTAATGTACACATTGCTAATGGCGCTTGTATCACAATCCAGTTTGTGACTAACATCATTATCCATGGTCTTCATATCCATGATTGCAAGCCCACAGGGAATGCCATGGTGAGAAGCTCTACAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCAATCTTTGGATCAAGCCATGTATGGATTGATCATAATTCACTCTCTAATTGTGCTGATGGCCTTGTTGATGCTATCATGGGCTCCACTGCAATCACTATCTCCAACAATCACTTCACTCACCACAATGAGGTGATGCTTCTAGGTCATAGTGATTCCTACACAAAAGACAAGCAAATGCAAGTCACCATTGCTTACAACCATTTTGGAAAGGGACTCATTCAAAGAATGCCAAGATGTAGGCATGGATATTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCCATTGGTGGGAGTGCAAACCCCACCATCAATAGTCAAGGCAACAGATATGCTGCTCCAACCAACCGTTTTGCCAAAGAGGTGACAAAGCGAGTAGAAACAGCGGAGAGCGAATGGAAAGGCTGGAACTGGAGATCAGAAGGAGATATGTTACTGAATGGAGCTTATTTCACCCCATCGGGCGCTGGAGCTTCAGCAAGCTATGCCAGAGCCTCCAGCTTAGGAGCCAAATCTGCTTCCATGGTTGGTACCATCACTTCTTCCGCAGGCTCGCTCCCTTGCCGCCGAGGCCGTCCCTGCTAG | 1347 | 47.36 | MAELSKWPSLSLLALAMVLLVTFALVRKQETSEIRTVLARKFQSSSNSSMATRLVNDDLEELNNEHAVDNPDEIAASVEMSIRNSTERRKLGFFSCETGNPIDDCWRCDANWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFERDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSTTHFGWRTMADGDAISIFGSSHVWIDHNSLSNCADGLVDAIMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGKGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNRFAKEVTKRVETAESEWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGTITSSAGSLPCRRGRPC | 448 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 34840872 | 34844400 | - | Sed0017855.1 | Sed04g2044 | 710647 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g2044 | 448 | PANTHER | PECTATE LYASE 18-RELATED | 20 | 445 | IPR045032 | GO:0030570(InterPro) | |
Sed04g2044 | 448 | SMART | amb_all | 174 | 371 | IPR002022 | - | |
Sed04g2044 | 448 | Pfam | Pectate lyase | 186 | 363 | IPR002022 | - | |
Sed04g2044 | 448 | PRINTS | Pollen allergen Amb family signature | 122 | 139 | IPR018082 | - | |
Sed04g2044 | 448 | PRINTS | Pollen allergen Amb family signature | 348 | 367 | IPR018082 | - | |
Sed04g2044 | 448 | PRINTS | Pollen allergen Amb family signature | 146 | 171 | IPR018082 | - | |
Sed04g2044 | 448 | PRINTS | Pollen allergen Amb family signature | 246 | 267 | IPR018082 | - | |
Sed04g2044 | 448 | PRINTS | Pollen allergen Amb family signature | 390 | 414 | IPR018082 | - | |
Sed04g2044 | 448 | PRINTS | Pollen allergen Amb family signature | 182 | 198 | IPR018082 | - | |
Sed04g2044 | 448 | PRINTS | Pollen allergen Amb family signature | 326 | 345 | IPR018082 | - | |
Sed04g2044 | 448 | PRINTS | Pollen allergen Amb family signature | 419 | 442 | IPR018082 | - | |
Sed04g2044 | 448 | FunFam | Pectate lyase | 99 | 441 | - | - | |
Sed04g2044 | 448 | SUPERFAMILY | Pectin lyase-like | 76 | 442 | IPR011050 | - | |
Sed04g2044 | 448 | Gene3D | - | 99 | 441 | IPR012334 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2037 | Sed-Chr3:14287530 | Sed04g2044 | Sed-Chr4:34840872 | 1.80E-152 | dispersed | |
Sed04g2044 | Sed-Chr4:34840872 | Sed12g0410 | Sed-Chr12:2470045 | 3.90E-189 | dispersed | |
Sed01g4237 | Sed-Chr1:70681923 | Sed04g2044 | Sed-Chr4:34840872 | 3.50E-195 | wgd | |
Sed12g0409 | Sed-Chr12:2470045 | Sed04g2044 | Sed-Chr4:34840872 | 6.40E-208 | wgd | |
Sed02g1468 | Sed-Chr2:50689600 | Sed04g2044 | Sed-Chr4:34840872 | 1.10E-215 | wgd | |
Sed04g2044 | Sed-Chr4:34840872 | Sed05g0178 | Sed-Chr5:1087714 | 6.00E-190 | wgd | |
Sed04g2044 | Sed-Chr4:34840872 | Sed09g0193 | Sed-Chr9:1553900 | 7.40E-241 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g2044 | K01728 | - | csv:101217580 | 842.802 |