Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2056 ATGGGCGGCGACGGAAACCTCTTCACGTTGGCCCAAGTCTCTCAGCACAATACCCGCAACGACTGCTGGTTGATCATCAATGCCAAGGTTTATAATGTAACGGAGTTCTTGGAGGACCATCCCGGTGGTGACGAGGTTTTGTTGTCGGGAACAGGTAAGGATGCAACTGATGATTTTGAAGATGTGGGTCATAGTGAGAGTGCAAGAGAAACGATGAACAAGTATTACATCGGAGATATCGACATCTCGACAATCCCAGAAAGTTTGTCATACACAGCTCCAAAGCAGCCTCACTACAATCAGGATAAGACGACCGAGTTCATCGTCAAGCTCCTCCAGTTCCTGGTTCCTCTTGCAATCTTGAGTCTGGCGGTAGGAATCCGCTTTTACAACAAATCAACCTGA 405 47.65 MGGDGNLFTLAQVSQHNTRNDCWLIINAKVYNVTEFLEDHPGGDEVLLSGTGKDATDDFEDVGHSESARETMNKYYIGDIDISTIPESLSYTAPKQPHYNQDKTTEFIVKLLQFLVPLAILSLAVGIRFYNKST 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34967221 34970161 - Sed0005564.1 Sed04g2056 710659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2056 134 Gene3D - 3 85 IPR036400 -
Sed04g2056 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Sed04g2056 134 PANTHER CYTOCHROME B5 7 121 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Sed04g2056 134 FunFam Cytochrome b5 type B 3 85 - -
Sed04g2056 134 SMART Cyt_b5_2 8 81 IPR001199 -
Sed04g2056 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Sed04g2056 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Sed04g2056 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Sed04g2056 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Sed04g2056 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Sed04g2056 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 88 IPR036400 -
Sed04g2056 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2056 K23490 - - csv:101213506 249.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2056 Sed-Chr4:34967221 Sed05g0385 Sed-Chr5:2623399 5.20E-41 dispersed
Sed12g0390 Sed-Chr12:2347770 Sed04g2056 Sed-Chr4:34967221 1.10E-54 wgd
Sed02g1490 Sed-Chr2:50846964 Sed04g2056 Sed-Chr4:34967221 1.40E-54 wgd
Sed04g2056 Sed-Chr4:34967221 Sed05g0197 Sed-Chr5:1203376 5.40E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g751 . . . . . . . . . . . Cma19g00162 . . . . Cpe15g00137 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed04g2056 . Cmo19g00182 . . . . . . Bhi12g01507 Tan06g2314 Cmetu05g1957 . . . Lcy13g0455 . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed05g0386 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed05g0385 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed01g3465 . 1 134 NADPH P450 reductases AT5G53560 75.4 3.1e-57 218.8
Sed02g1490 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.9e-51 199.5
Sed12g0390 . 1 133 NADPH P450 reductases AT5G53560 67.7 2.5e-51 199.1
Sed04g2056 . 1 133 NADPH P450 reductases AT5G53560 61.7 9.3e-46 180.6
Sed05g0197 . 5 131 NADPH P450 reductases AT5G53560 65.4 1.2e-45 180.3
Sed02g1783 . 1 134 NADPH P450 reductases AT5G53560 56.0 4.5e-40 161.8
Sed01g3466 . 1 98 NADPH P450 reductases AT5G53560 73.5 5.5e-38 154.8
Sed05g0198 . 14 124 NADPH P450 reductases AT5G53560 65.8 7.1e-38 154.5
Sed12g0390 . 1 132 NADPH P450 reductases AT5G48810 64.2 1.4e-47 186.8
Sed02g1490 . 1 132 NADPH P450 reductases AT5G48810 63.4 1.8e-47 186.4
Sed04g2056 . 1 133 NADPH P450 reductases AT5G48810 58.5 3.1e-44 175.6
Sed01g3465 . 1 134 NADPH P450 reductases AT5G48810 58.1 7.0e-44 174.5
Sed05g0197 . 5 131 NADPH P450 reductases AT5G48810 62.0 9.1e-44 174.1
Sed05g0386 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed05g0385 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed02g1783 . 1 134 NADPH P450 reductases AT5G48810 52.2 2.8e-37 152.5
Sed12g0390 . 22 133 NADPH P450 reductases AT2G32720 84.8 1.3e-50 196.8
Sed02g1490 . 22 133 NADPH P450 reductases AT2G32720 83.0 2.1e-50 196.1
Sed04g2056 . 22 133 NADPH P450 reductases AT2G32720 76.8 5.4e-46 181.4
Sed05g0198 . 14 125 NADPH P450 reductases AT2G32720 70.5 1.8e-41 166.4
Sed05g0197 . 21 132 NADPH P450 reductases AT2G32720 69.6 1.5e-40 163.3
Sed05g0386 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed05g0385 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed01g3465 . 22 133 NADPH P450 reductases AT2G32720 63.4 1.2e-37 153.7
Sed03g2083 . 2 281 NADPH P450 reductases AT5G17770 79.3 1.8e-128 456.4
Sed02g0277 . 2 280 NADPH P450 reductases AT5G17770 73.1 9.1e-120 427.6
Sed05g1022 . 1 282 NADPH P450 reductases AT5G17770 68.9 1.2e-114 410.6
Sed05g0386 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed05g0385 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed01g3465 . 1 134 NADPH P450 reductases AT5G53560 75.4 3.1e-57 218.8
Sed02g1490 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.9e-51 199.5
Sed12g0390 . 1 133 NADPH P450 reductases AT5G53560 67.7 2.5e-51 199.1
Sed04g2056 . 1 133 NADPH P450 reductases AT5G53560 61.7 9.3e-46 180.6
Sed05g0197 . 5 131 NADPH P450 reductases AT5G53560 65.4 1.2e-45 180.3
Sed02g1783 . 1 134 NADPH P450 reductases AT5G53560 56.0 4.5e-40 161.8
Sed01g3466 . 1 98 NADPH P450 reductases AT5G53560 73.5 5.5e-38 154.8
Sed05g0198 . 14 124 NADPH P450 reductases AT5G53560 65.8 7.1e-38 154.5
Sed12g0390 . 1 132 NADPH P450 reductases AT5G48810 64.2 1.4e-47 186.8
Sed02g1490 . 1 132 NADPH P450 reductases AT5G48810 63.4 1.8e-47 186.4
Sed04g2056 . 1 133 NADPH P450 reductases AT5G48810 58.5 3.1e-44 175.6
Sed01g3465 . 1 134 NADPH P450 reductases AT5G48810 58.1 7.0e-44 174.5
Sed05g0197 . 5 131 NADPH P450 reductases AT5G48810 62.0 9.1e-44 174.1
Sed05g0386 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed05g0385 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed02g1783 . 1 134 NADPH P450 reductases AT5G48810 52.2 2.8e-37 152.5
Sed12g0390 . 22 133 NADPH P450 reductases AT2G32720 84.8 1.3e-50 196.8
Sed02g1490 . 22 133 NADPH P450 reductases AT2G32720 83.0 2.1e-50 196.1
Sed04g2056 . 22 133 NADPH P450 reductases AT2G32720 76.8 5.4e-46 181.4
Sed05g0198 . 14 125 NADPH P450 reductases AT2G32720 70.5 1.8e-41 166.4
Sed05g0197 . 21 132 NADPH P450 reductases AT2G32720 69.6 1.5e-40 163.3
Sed05g0386 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed05g0385 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed01g3465 . 22 133 NADPH P450 reductases AT2G32720 63.4 1.2e-37 153.7
Sed03g2083 . 2 281 NADPH P450 reductases AT5G17770 79.3 1.8e-128 456.4
Sed02g0277 . 2 280 NADPH P450 reductases AT5G17770 73.1 9.1e-120 427.6
Sed05g1022 . 1 282 NADPH P450 reductases AT5G17770 68.9 1.2e-114 410.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156