Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2056 ATGGGCGGCGACGGAAACCTCTTCACGTTGGCCCAAGTCTCTCAGCACAATACCCGCAACGACTGCTGGTTGATCATCAATGCCAAGGTTTATAATGTAACGGAGTTCTTGGAGGACCATCCCGGTGGTGACGAGGTTTTGTTGTCGGGAACAGGTAAGGATGCAACTGATGATTTTGAAGATGTGGGTCATAGTGAGAGTGCAAGAGAAACGATGAACAAGTATTACATCGGAGATATCGACATCTCGACAATCCCAGAAAGTTTGTCATACACAGCTCCAAAGCAGCCTCACTACAATCAGGATAAGACGACCGAGTTCATCGTCAAGCTCCTCCAGTTCCTGGTTCCTCTTGCAATCTTGAGTCTGGCGGTAGGAATCCGCTTTTACAACAAATCAACCTGA 405 47.65 MGGDGNLFTLAQVSQHNTRNDCWLIINAKVYNVTEFLEDHPGGDEVLLSGTGKDATDDFEDVGHSESARETMNKYYIGDIDISTIPESLSYTAPKQPHYNQDKTTEFIVKLLQFLVPLAILSLAVGIRFYNKST 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34967221 34970161 - Sed0005564.1 Sed04g2056 710659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2056 134 Gene3D - 3 85 IPR036400 -
Sed04g2056 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Sed04g2056 134 PANTHER CYTOCHROME B5 7 121 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Sed04g2056 134 FunFam Cytochrome b5 type B 3 85 - -
Sed04g2056 134 SMART Cyt_b5_2 8 81 IPR001199 -
Sed04g2056 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Sed04g2056 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Sed04g2056 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Sed04g2056 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Sed04g2056 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Sed04g2056 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 88 IPR036400 -
Sed04g2056 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2056 Sed-Chr4:34967221 Sed05g0385 Sed-Chr5:2623399 5.20E-41 dispersed
Sed12g0390 Sed-Chr12:2347770 Sed04g2056 Sed-Chr4:34967221 1.10E-54 wgd
Sed02g1490 Sed-Chr2:50846964 Sed04g2056 Sed-Chr4:34967221 1.40E-54 wgd
Sed04g2056 Sed-Chr4:34967221 Sed05g0197 Sed-Chr5:1203376 5.40E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2056 K23490 - csv:101213506 249.21